Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00177 ATGGCGGTGGCACGAACTACGTCGATTGTTTTTCGTGGAATTTTTCGTCCTCAGCAGAACAATTTGTTATCGCCTTTCCGTTTGTGTCCAACTGTTTCGAACAACTCCGTGATATCGCTTCGGTTCGTGGCTCGAGGAATCTGTTTCAGCCGTGTTCAGTGCGCCGCGTCGTATTCCGGAGACGATGGTAAAAAGGTCTCAGCTCGGCTTTCGCAGGTCCAGCAGCTATTGCAGGAGGCTGAGGAGCGAGCTTTCTGTGCGGACGACGGGCCCGTCCCTAGAATTACCATCGACCATGTAACTGTGAATTTTGCCAGAAGTGGAGGTCCAGGTGGTCAGAATGTCAATAAGGTGAACACAAAGGTGGACATGCGGTTCAATGTCAAAAATGCTTATTGGCTAAGTGACAGGATTAGAGAGAAAATTATGCAAATGGAGAAAAATCGTATTAATAAAGATGGGGAGCTTGTGATTTCTTCTACAAAAACTAGAACACAGAAAGGCAACATCGAAGATGCACTTGAAAAACTTCAGGCAATCATTGATGCTGCTTCATATGTTCCACCACCTCCTTCAGAAGAGCAAAAGAAGAAAATAGAGAAGATGGCTGCTATTGGGGAACAAAAGCGCCTCAAAAGCAAGAAGGCACTTTCAGACAAGAAAGCATTTCGAAGAAGTCGAGCAAGTGTCGCTCATTCTCAATCTTCTTCTTCTTCTCCTTCTTCTTCTTGTGCCAGCCACAATCCTGAGAACTGGTTGCCCATAATGCACCGTTTGAGACTGTCCCTCCACTTTCCACCCTCCATTGCTTTCCCTCTCAGAACCTTCCGCGCCACACCATCGAAGGAATTCTCCGACCATCACCAAACCCACCTCCAGAACGCCGGTGCCTTAACCTCCCATTTGAAGTCCCGGTCCGTAGTACGGTTTCGTGGCCCAGACACGGTCAAGTTTCTTCAAGGTCTATTGACCAACGATGTGAGAAAATTTGGCGATTCCCCGAGCGAGGCAACTGCGACTTTACCTGCTCCCAATTTGGCCCCTCTCTCCGTTTCGCCGATTTATGCTGCTTTATTGACCCCTCAAGGAAGGTTTCTGTTCGACTTTTTTCTGTATAGACCGCCGAGGCCCGATGAGAAGCTTGATCGAACTGGGTCTAGACCTGGTTCGGCGCCAGATCAACCGTTTGAGCTCTTTGCTGATGTTGATTCTTCGGTATTGGAAGAACTCCTGGATACGCTTAAAAAGTACCGTTTGAGATCTAAGGTGGAGATTGAGAATGTGGGAGGAGACTACTTTTGCTGGCAACGATATGGAAAGAACTTAGGCAAGAAAGCTTCAGCTGCTGAAGAACCAGAAACTGCGAGTGTTGGCTGGGGAGCTGGTGCTGATAGTACAGCCATGGCTGCTTCTCATGGGGAAGAACATGGATGGCAATGGTTCAAGGATCCGAGGCTAGAATGCCTCGGTTTCAGGGGAATTTTCCCAGCTAAAGAAACTCCACCTCTAGTTGAAGCTGATAAAGAAACAGATGAAGAGAATTACATGATATGGAGATTAGAAAAAGGAGTTGCAGAAGGTTCAACTGAGATTCCAAAAGGTGAGGCAATGCCCCTAGAATATAATCTTGCAGGCCTGAATGCAATAAGCTTTGACAAAGGGTGTTATGTAGGCCAAGAGCTCGTAGCTCGGACGCATCACCGGGGGGTGATTCGCAAGCGCATAATGCCTCTACGCTTTCTTAATGATCGAGGAGAAGTGGTGGAACAGAAAGTGAGTCCCGGATCGGAAGTGATCGAGTTTGCCTCTGGTAAGAAAGCCGGCTCGGTGACCACTGCGCTCGGATGCCGTGGATTGGGTCTGTTACGATTAGAAGACGCATTTAAACGATCGGGAGAATTAAGAATACGAGGATTAGAGGATGTGAAAATTGAAGCTCTTAGACCAGATTGGTGGCCCCATCACTGGCTTCTAGATGATCAACAAAGCAGTGCAGCTGCATAG 2004 47.75 MAVARTTSIVFRGIFRPQQNNLLSPFRLCPTVSNNSVISLRFVARGICFSRVQCAASYSGDDGKKVSARLSQVQQLLQEAEERAFCADDGPVPRITIDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKNAYWLSDRIREKIMQMEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIEKMAAIGEQKRLKSKKALSDKKAFRRSRASVAHSQSSSSSPSSSCASHNPENWLPIMHRLRLSLHFPPSIAFPLRTFRATPSKEFSDHHQTHLQNAGALTSHLKSRSVVRFRGPDTVKFLQGLLTNDVRKFGDSPSEATATLPAPNLAPLSVSPIYAALLTPQGRFLFDFFLYRPPRPDEKLDRTGSRPGSAPDQPFELFADVDSSVLEELLDTLKKYRLRSKVEIENVGGDYFCWQRYGKNLGKKASAAEEPETASVGWGAGADSTAMAASHGEEHGWQWFKDPRLECLGFRGIFPAKETPPLVEADKETDEENYMIWRLEKGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELVARTHHRGVIRKRIMPLRFLNDRGEVVEQKVSPGSEVIEFASGKKAGSVTTALGCRGLGLLRLEDAFKRSGELRIRGLEDVKIEALRPDWWPHHWLLDDQQSSAAA 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4424305 4430353 - BLOR11358 Blo03g00177 57641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00177 667 Coils Coil 63 83 - -
Blo03g00177 667 Gene3D Probable tRNA modification gtpase trme; domain 1 278 648 IPR027266 GO:0005515
Blo03g00177 667 SUPERFAMILY Peptidyl-tRNA hydrolase domain-like 94 185 - -
Blo03g00177 667 MobiDBLite consensus disorder prediction 228 247 - -
Blo03g00177 667 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 106 122 IPR000352 GO:0003747|GO:0006415
Blo03g00177 667 TIGRFAM ygfZ_signature: folate-binding protein YgfZ 514 579 IPR017703 -
Blo03g00177 667 SUPERFAMILY Folate-binding domain 288 570 - -
Blo03g00177 667 MobiDBLite consensus disorder prediction 210 247 - -
Blo03g00177 667 PANTHER UNCHARACTERIZED 280 654 IPR045179 -
Blo03g00177 667 Pfam RF-1 domain 96 222 IPR000352 GO:0003747|GO:0006415
Blo03g00177 667 Gene3D - 93 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00177 K22073 IBA57; transferase CAF17, mitochondrial [EC:2.1.-.-] - fve:101299581 570.081
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g482 . Blo03g00177 Bda06g00050 . . Bpe07g00149 . . . Cmo16g01090 . . . . . Cpe14g00862 . . . . . . . . Cla10g00297 Cam10g0311 Cec10g0321 Cco10g0314 Clacu10g0308 Cmu10g1147 Cre10g0557 . . Cone6ag0710 Cone9ag0712 . . . . . . . . . . . Bma12g00143 . . . . Cma16g01042 . Car16g00993 . . . . . . . . . . . . . . . . . . Chy06g02004 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009813 1 0 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00177 Blo_Chr03 FPKM 22.711969 20.641069 17.071848 18.208668 22.299837 20.365271 23.156969 13.112453 12.842022 13.218376