Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00184 ATGGGGAGGTTGAACTTCTTCTTCGTCTTGCTTATTTTGGCAGTCAACGGAAAATCAGTGTTGGCAGTCACCGTCTTTCAACCGGGCCCTTGGACACCCGCTCACGCCACCTTTTACGGGGATGAAACGGCCTCCGAGACGATGGGAGGGGCATGCGGGTACGGAAACTTGTTTTCGAATGGGTATGGAGTGGAAACGGCTGCATTGAGCTCTACGTTATTCAATAACGGATACGCATGTGGGACATGTTACCAAATAAAATGTTTTCAATCAAAGGCATGCTTCACCAACGTAGCATTCACCACCATCACGGCCACTAACCTCTGCCCTCCAAATTGGTCCGAAGACTCCAATGATGGTGGCTGGTGCAACCCTCCCAGAGCTCACTTCGACATGTCCAAGCCCGCCTTCATGACAATCGCCAATTGGCAAGCTGGCATTGTCCCGGTCCTCTACCGAAGGGTACCATGCGTGAGGAGCGGGGGGTTGAGATTCAACTTTCAGGGGAACGGATATTGGCTTCTCGTGTACGTGATGAACGTCGGAGGAGGGGGAGATTTAGTGACAATGCAAGTAAAAGGAAGCAAGACAGGGTGGATAAGCATGAGCCACAATTGGGGAGCTTCATACCAAGCATTTGCCTCATTGGGTGGTCAACCTCTATCTTTTATGCTGACCTCCTACACTTCCAAAGAGACTGTTTATGCTTGGAATGTTGCTCCTTCTAATTGGCAAGTAGGGTTGACCTACCAATCTTCTATTAATTTCCACTAA 774 49.48 MGRLNFFFVLLILAVNGKSVLAVTVFQPGPWTPAHATFYGDETASETMGGACGYGNLFSNGYGVETAALSSTLFNNGYACGTCYQIKCFQSKACFTNVAFTTITATNLCPPNWSEDSNDGGWCNPPRAHFDMSKPAFMTIANWQAGIVPVLYRRVPCVRSGGLRFNFQGNGYWLLVYVMNVGGGGDLVTMQVKGSKTGWISMSHNWGASYQAFASLGGQPLSFMLTSYTSKETVYAWNVAPSNWQVGLTYQSSINFH 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4497430 4498488 - BLOR11365 Blo03g00184 57648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00184 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Blo03g00184 257 SMART dpbb_1 66 152 IPR007112 -
Blo03g00184 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Blo03g00184 257 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Blo03g00184 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Blo03g00184 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Blo03g00184 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Blo03g00184 257 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Blo03g00184 257 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Blo03g00184 257 SUPERFAMILY Barwin-like endoglucanases 30 180 IPR036908 -
Blo03g00184 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Blo03g00184 257 PANTHER EXPANSIN-A7 8 257 - -
Blo03g00184 257 Gene3D - 163 257 IPR036749 -
Blo03g00184 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 162 IPR007112 -
Blo03g00184 257 PANTHER EXPANSIN-A15 8 257 IPR002963 GO:0009664
Blo03g00184 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Blo03g00184 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Blo03g00184 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Blo03g00184 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Blo03g00184 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Blo03g00184 257 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Blo03g00184 257 Gene3D - 16 157 IPR036908 -
Blo03g00184 257 Pfam Lytic transglycolase 66 152 IPR009009 -
Blo03g00184 257 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00184 Blo-Chr3:4497430 Blo13g00884 Blo-Chr13:31385612 1.90E-89 dispersed
Blo13g00371 Blo-Chr13:21519812 Blo03g00184 Blo-Chr3:4497430 7.80E-37 dispersed
Blo02g01081 Blo-Chr2:41328273 Blo03g00184 Blo-Chr3:4497430 3.49E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00184 - - qsu:111989333 440.654