Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00193 ATGGCGTCGAGTTCTTCTTCAAGGAAACACTCTCTTTACAGAGGCATTCGTTGCAGAAGCGGGAAATGGGTTTCCGAAATCCGAGAGCCACGTAAAACGAATCGAATTTGGCTCGGGACCTTCCCCTCCCAGGAAATGGCGGCGGCCGCCCACGACGTTGCTGCCTTAGCGCTCAAAGGAAACGACGCAACTCTTAACTTCCCGGCACTGGTCGGTTCTTATCCAGTTCCGGCTTCTACCTCACCGGCCGATATCAGAGAAGCCGCCTTAGCTGCCGCGACGCTGATGAAAATGAGATCGAAAGACGATGATCGGGCGAATGAGCAGTTCAGTAAACTGAGCGATGAATTTCTCGACGAGGAGGAGATTTTCGACATGCCCAATTTGCTAGTGGACATGGCAGGAGGAATGCTAATGTCCCCGCCGAGAATAAACTTCCCGCCGGACCACGAGCCGGCTGTTTCCGATGGACTAGAGCGTTTATGGAGCCATTTTTGA 498 53.01 MASSSSSRKHSLYRGIRCRSGKWVSEIREPRKTNRIWLGTFPSQEMAAAAHDVAALALKGNDATLNFPALVGSYPVPASTSPADIREAALAAATLMKMRSKDDDRANEQFSKLSDEFLDEEEIFDMPNLLVDMAGGMLMSPPRINFPPDHEPAVSDGLERLWSHF 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4606548 4607045 - BLOR11374 Blo03g00193 57657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00193 165 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Blo03g00193 165 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Blo03g00193 165 PANTHER ETHYLENE RESPONSE FACTOR 1 165 - -
Blo03g00193 165 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 165 - -
Blo03g00193 165 Pfam AP2 domain 12 60 IPR001471 GO:0003700|GO:0006355
Blo03g00193 165 Gene3D AP2/ERF domain 12 70 IPR036955 GO:0003700|GO:0006355
Blo03g00193 165 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
Blo03g00193 165 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00193 Blo-Chr3:4606548 Blo09g00514 Blo-Chr9:16302623 3.71E-49 dispersed
Blo02g01096 Blo-Chr2:41877202 Blo03g00193 Blo-Chr3:4606548 3.80E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12094 PF00847 AP2 1.20E-09 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00193 - - jre:108990846 213.772