Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00196 ATGGCCAGACCTAGTCAGGAATCAATAGATATGTTTATGAGCATCACCGGCGCATCCGAAGCCGATGCCGCTCAGACACTCCAGGTATATAGTGGTGATCTCAATTCTGCCGTGAATTCATATTTTGGTGAAGGAGATAGGCGCATACCTGCAAACGAGCATGAGACATCTGTTGCTGCTCAAGTTGATTTCATGGATATTGATGATCCACTTGAAATTGATTCACAGCGACTTCCTTCATCTCTTCTGTCTGAAGCTAGAGCGATAATGAATCCGTTTTCCATTCTAGATTCAACAATCCCTGGGAGATTATCTGATATAAATCCCAATTTTACAAGTCACTCACCATTTACTCCCCCAAGAGAGGTGAGAGAGATTCCCGTAGAGGTCAAAGATGACAATCTACCATCCAGCCAATCTGGCCTTGCTCCTAGAACAGAAGATACCTCTGAAACTTCAGATGTAAAAGGGCCAGTTGTATCGGTAGAAGATGATCATACTTTGGTTGACCCCACTATACAGGTGACAAGTCGTGGGGAGCGGTCTGGTGGCAGTTCTCGCGAAGGGGTTGTTAGACCTAGTGCTCCTGAAATTGATCAGTACCCGGACTATGGCAATGACATTGAAGAAGAAATGATCCGAGCTGCAATTGAGGCTTCAAGAAGAGAAGCTGAACAAGGCTTCTCAACTCAGCCATTTGGTGCACAAAATGATTCAATGGGTGCTGGTCCCCATCAACCGGGTCCTTATTTTGAAGATCCTGAACTTGCCCATGTCGTTTCATTATCTCTGAAGAAAGCAATACGTGAGAAGGGAGCAAGTGTTGTAGAATTACAAGAGGGTGCTTGTTCGGCAAATGAGGAGGAGATGAAGAAAATAGGATCAACAAATGAAAGTTCCAAAGTTGGACACACATCTATTTGTAATGAGGATGAAGAGTTGGAGGATAAACCATTACTCAATCATGAGTCCAGGGGTTCATCCTCTGGGACCAATGGAACTGCCAAAGTTGGCATTAGTACTATAAGCCCACCATCAAGTCCGAGGGAGCAAAAAACAGGAAACTCCTCCCAGCACAATGGGAATGCCTTCCCGTCTGATGAGTGGGGTGGCATATCTTCGGAGGAACACGATGAAGCAGTCATGCTGGAAGCTGCTATGTTTGGTGGAATTCCTGAAGGGAGAGGATATCATTTTACCCGTGCACCTCATCAATTCATCAGAAATGGTGATTCTTATCTCCAACCCTTTCCCCGTGCTCCTTCTCCATCTCTTTTGGCTCAGCGCATTATACGGGAGCAGCAGGATGACGAATATCTTGCAGCATTGCAAGCTGATAAAGAAAAGGAAGTAAAAGCAATGGAGGAGGCTGAAGCTCGTCGGCAAGAAGAGAGGCAAAAAGAGGAAGAAATTCGCATTAAACTGGAGCAGCAGCAGGAATTAGAAAGGCAGTTAGCAGCAAAAGAAGCTTCTCTACCTGATGAGCCATCCGCAGATGATGAAAATGCTGTGACCCTTCTGGTGCGCATGCCAGAGGGTAGCCGTCATGGACGCCGATTTCTAAAACATGACAGGCTACAGTGCCTCTTTGATTTCATTGATATTACTAGAGTTGTTAAACCTGGCTCATATAGATTGGTAAGACCATACCCTAGGCGTGTTTTCGGCGATGGCAAGACCGCTTTGACACTGAGTGAGCTCGGCCTTACTAGCAAACAAGAGGCTTTGTTTCTTGAGTTGATATAG 1746 45.53 MARPSQESIDMFMSITGASEADAAQTLQVYSGDLNSAVNSYFGEGDRRIPANEHETSVAAQVDFMDIDDPLEIDSQRLPSSLLSEARAIMNPFSILDSTIPGRLSDINPNFTSHSPFTPPREVREIPVEVKDDNLPSSQSGLAPRTEDTSETSDVKGPVVSVEDDHTLVDPTIQVTSRGERSGGSSREGVVRPSAPEIDQYPDYGNDIEEEMIRAAIEASRREAEQGFSTQPFGAQNDSMGAGPHQPGPYFEDPELAHVVSLSLKKAIREKGASVVELQEGACSANEEEMKKIGSTNESSKVGHTSICNEDEELEDKPLLNHESRGSSSGTNGTAKVGISTISPPSSPREQKTGNSSQHNGNAFPSDEWGGISSEEHDEAVMLEAAMFGGIPEGRGYHFTRAPHQFIRNGDSYLQPFPRAPSPSLLAQRIIREQQDDEYLAALQADKEKEVKAMEEAEARRQEERQKEEEIRIKLEQQQELERQLAAKEASLPDEPSADDENAVTLLVRMPEGSRHGRRFLKHDRLQCLFDFIDITRVVKPGSYRLVRPYPRRVFGDGKTALTLSELGLTSKQEALFLELI 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4640054 4644244 + BLOR11377 Blo03g00196 57660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00196 581 PANTHER OS09G0525600 PROTEIN 1 581 - -
Blo03g00196 581 SUPERFAMILY UBA-like 2 44 IPR009060 GO:0005515
Blo03g00196 581 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 209 227 IPR003903 -
Blo03g00196 581 Gene3D - 1 45 - -
Blo03g00196 581 ProSiteProfiles UBX domain profile. 499 577 IPR001012 GO:0005515
Blo03g00196 581 PANTHER FAS-ASSOCIATED PROTEIN 1 581 - -
Blo03g00196 581 MobiDBLite consensus disorder prediction 323 364 - -
Blo03g00196 581 SUPERFAMILY Ubiquitin-like 462 577 IPR029071 -
Blo03g00196 581 Coils Coil 440 491 - -
Blo03g00196 581 MobiDBLite consensus disorder prediction 233 253 - -
Blo03g00196 581 Pfam UBX domain 500 579 IPR001012 GO:0005515
Blo03g00196 581 SMART ubx_3 496 580 IPR001012 GO:0005515
Blo03g00196 581 MobiDBLite consensus disorder prediction 173 203 - -
Blo03g00196 581 CDD UBX 505 579 - -
Blo03g00196 581 Gene3D - 500 580 - -
Blo03g00196 581 MobiDBLite consensus disorder prediction 133 156 - -
Blo03g00196 581 MobiDBLite consensus disorder prediction 318 377 - -
Blo03g00196 581 MobiDBLite consensus disorder prediction 129 157 - -
Blo03g00196 581 CDD UBA_Ubx1_like 6 42 - -
Blo03g00196 581 Pfam UBA-like domain 6 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00196 - - - mdm:114824350 557.755
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g01097 Blo03g00196 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00196 Blo-Chr3:4640054 Blo04g00728 Blo-Chr4:6750357 2.44E-14 dispersed
Blo02g01097 Blo-Chr2:41912902 Blo03g00196 Blo-Chr3:4640054 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g368 Blo02g01097 Blo03g00196 . . . . . . . . . . . . . . . Bhi11g00393 . . . Hepe06g1233 . . Cla10g00354 Cam10g0366 Cec10g0384 Cco10g0379 Clacu10g0370 Cmu10g1207 Cre10g0622 . . . . . . . . . . . . . . . . . . . Cma06g00707 . . Car16g00956 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44