Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00199 ATGGCTTCCTCCGCAGCCATCGTGGATTCTACGCCGTTGCTGGCGAATCAGGGCGGGTCTTCTGGTGAAACGAATGCAAGTCGTCGATTTGTTCAGAGGCAGAGCCTGCGTCAGGCGGCGAGGTTTTTGAGGCAAACGAGCAGTGGGGGAATGATGCGCGAGTCTTCGATGCGAGTGAGAGAGGCTGCAGCGGAGCAATTGGAGGAGAGGCAGACCGATTGGGCGTATTCGAAACCGGTTGTGATTCTGGATATTGTTTGGAATTTCGCCTTTGTGGTTGTAGCTGCTACAATGCTCGTTATGAGCAGGGCTGAGTCGCCGGATGTGCCCTTGAGACTGTGGCTGGTAGGATATGGTTTTCAATGCGTTCTTCATATGGTGTGTGTGTGTTTCGAATATAGACGTCGTAGACACCGGCTCCCCACGCAGATGGTTAATTCAGTTGAAGGGGAAAACGGAGCTGCTGACCAATCAGGCTCTGGATCGAGAGAGAATTCACGGCCGTACTTAACTCTGGGACAATTAAACGAGGAGGGTACAAGTGTTGCTAAGCATCTTGAGTCGGCAAATACAATGTTTTCGTTTATCTGGTGGATTATTGGATTCTATTGGGTATCAGCAGGAGGTCAAAGTTTGGCACATGCCTCTCCTCAGCTTTACTGGTTTGTGTTGTGCATAATTTTCTTAGGTTTTGATGTGTTCTTTGTCGTTTTTTGTGTTGCTTTGGCGTGTGTAATCGGAATTGCTGTTTGTTGCTGTCTTCCATGTATCATTGCGCTTCTTTATGCTATAGCTGACCAGGAAGGAGCATCCAGAGAAGACATTGAACAGTTGTCTAAATTCAAATTCAGAAAATGTGGAGATTCAGATAAGCTATCCAGCGATGTACAAGAACCTTATGGGGGAATAATGACAGAATGCGGCACAGATTCACCCATCGAACATGTGCTCTCACAAGAAGATGCAGAATGCTGCATCTGCATTTCTGCTTATGAGGATGGAGTTGAGCTGAGGGAGCTTCCTTGTGGCCACCATTTTCACTGTACATGCGTAGATAAATGGCTACACATTAATGCTACTTGTCCTCTCTGTAAATACAACATTTTGAAGTTTAGCAACCACGGACAAGATGAAGTTTAG 1140 46.67 MASSAAIVDSTPLLANQGGSSGETNASRRFVQRQSLRQAARFLRQTSSGGMMRESSMRVREAAAEQLEERQTDWAYSKPVVILDIVWNFAFVVVAATMLVMSRAESPDVPLRLWLVGYGFQCVLHMVCVCFEYRRRRHRLPTQMVNSVEGENGAADQSGSGSRENSRPYLTLGQLNEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHASPQLYWFVLCIIFLGFDVFFVVFCVALACVIGIAVCCCLPCIIALLYAIADQEGASREDIEQLSKFKFRKCGDSDKLSSDVQEPYGGIMTECGTDSPIEHVLSQEDAECCICISAYEDGVELRELPCGHHFHCTCVDKWLHINATCPLCKYNILKFSNHGQDEV 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4665945 4668366 + BLOR11380 Blo03g00199 57663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00199 379 CDD RING-H2_RNF111_like 323 367 - -
Blo03g00199 379 SUPERFAMILY RING/U-box 314 371 - -
Blo03g00199 379 Pfam Ring finger domain 323 365 IPR001841 -
Blo03g00199 379 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 379 - -
Blo03g00199 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 373 IPR013083 -
Blo03g00199 379 PANTHER TARGET OF ERK KINASE MPK-1 2 379 - -
Blo03g00199 379 SMART ring_2 324 364 IPR001841 -
Blo03g00199 379 ProSiteProfiles Zinc finger RING-type profile. 324 365 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00199 Blo-Chr3:4665945 Blo18g00046 Blo-Chr18:306739 5.93E-48 dispersed
Blo03g00199 Blo-Chr3:4665945 Blo03g00200 Blo-Chr3:4674406 1.18E-33 tandem
Blo02g00374 Blo-Chr2:4195202 Blo03g00199 Blo-Chr3:4665945 5.33E-110 transposed
Blo06g01030 Blo-Chr6:33623785 Blo03g00199 Blo-Chr3:4665945 1.19E-108 transposed
Blo11g00077 Blo-Chr11:585960 Blo03g00199 Blo-Chr3:4665945 1.02E-72 transposed
Blo02g01099 Blo-Chr2:41935822 Blo03g00199 Blo-Chr3:4665945 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00199 - - csv:101209228 559.681