Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00204 ATGACTTATTGCGAGGGAGAGAGTAATGGGGGAGGAGATGTGGTCCCGGAGCTGAGGCTGAGAATAGAAGGGGACGGCGACAATGGGGATTATGTCAAATTGGGGGAAAGCCCTGATGATTCGCATGCAGAAGAGGAGTATGTTGGGGTGACCGAGCCTTCTTCTTCTCCGGCAACGATTGCCGGGGCTGTGTGGCTCTGGTTTAGGCTGGTCGTGTTGTTTTTATTTTTGGGATTATTGGCTGTGGTTTGCATCAAATGGGTCGGCCCCTTTCTCATGGACAAGGGAATTATACCGATTTTGAATTGGGAAACAATGACGTTTAGCAATCCCGTTCTAGCGATTCTGGTTTTTTCGTCGGTTGCCTTATTTCCTACTATTCTCTTGCCGTCTACGCCTTCGATGTGGGTGGCAGGCATGACTTTCGGCTATGGCTATGGATTTCTCTTGATTATATCTGGGGCAGTTATTGGCGTTTCTCTTCCATTTTTTGTTGGGTCGCTCTTCTATCACAAAATTCATGGGTGGTTAGAAAAGTATCCAAAGAGGGCGTCCGTTTTAAGGTCAGCCGTGGCTACAAACGTTAGATATACTCCATACCTCTTGGGGTCGTTAACCGGGTTGATTCCTGAAATATTTGTCGCAATCTACACTGGCATCGTAATACGAACTTTGGCCGACGCCTCAAACCAGCGGCACGGCCTCTCGGCCCCGCAGATCGTCTTCACTGTGGTTGGCTTTTGCGTAACTGTGGCCACTACCGTTTTCATCACCACGTACGCAAAAAGGCACCTGAAGCAATTGCAGAACGAGGACGATGAACTTCTCCAAAGAGTGAACTTTGAGTCATTGGCTGAATATGAAATTGACGAATTGTTTGAGGGGGCTGGTTTAGCCAGTTTGTACCGATTGAGTGGAAGTTACTGGTTATTAGAGTTTGAAATATCGCATGAAAATATTAGAAACCCGGCCAAGAGTCTGTCATTCAATTGGCTCATTCAAAGGATTGTTGAGCATTACGGGTTACCGATCTTGGATGAGGAGCCGAGAATTGAAGAGAAAGCCACCGACGTTTACAACAAATTGAAAGTGGACCGATTGGGGCTCAACAAAGTTGAAGAGCTATGGTGCTATGCCTTGAACGAAGAAGAATACTTCCAAGTTCAAATGGAAAAATCGCTACTTACAATAGGGTGGATTCACGTAAGGGACTGGGAATCGGGAGGGAGGGACGGGATTCGGGAGGGGACTGGGACTCGGGAGGGGACTGGGACTCGGGAGGGAGGGACGGGATCTGAAATCCCGGTTCTACCCGGTACCGGTTCAATGGTACCTGGTACCGTGGACCGGTACCGGGTAGAACCGGTCCCTATAGCACTGGACCGGGTCCGGTCCGGTGCTACATATACATGTACCGGTCCCGGTACCGAAAGGCCGGTTCCGGTCCGTCTTTTATTGGCTAAAGTTCATCCTCGATCTTCTCTTTTGCCTCCATTTCTTAACCCAGAAACAGAAACTTTCACAGTATGGATGAAATCTCTTCTGTACCACTCCAATGGCTTCACCGTCTTCAACTCCAATGGCGATATTGCATATCGAGTTGATAATTACGAGACGAAGTGCAGTAATGAAGTTCATCTCATGGATCTTCACGGCCAAACTCTGTTTTCGATCATTCTCAAAAAGAAATTATACGTTTTTGGAAGATGGGAAGCGTACAGATGGAGTGGCTCAGAAATGAACGAGAAGCCATTTTTCAAAGCCAGGAAGCTAATGGGGGGCTGTTCTTGTCAAATTACAGTTGGATCGGAGAAGTATCGGATTCTGAAAAAGGCGGGCGGGATTTCTTTCAGAATAATAAACATGAACGGAGATACTGTTGCAGAGGCGAAGCAGAAGCTGTCGTCTTCTGGTGTGGTTTTAGGAGACGATGTGTTGAGTTTGGAGGTGAAGCCTCGGACTGACTCCTCCTTTATCATGGCGCTGGTTATTGTCCATGGTTTAATCAATCACCAAATGTAA 2022 47.43 MTYCEGESNGGGDVVPELRLRIEGDGDNGDYVKLGESPDDSHAEEEYVGVTEPSSSPATIAGAVWLWFRLVVLFLFLGLLAVVCIKWVGPFLMDKGIIPILNWETMTFSNPVLAILVFSSVALFPTILLPSTPSMWVAGMTFGYGYGFLLIISGAVIGVSLPFFVGSLFYHKIHGWLEKYPKRASVLRSAVATNVRYTPYLLGSLTGLIPEIFVAIYTGIVIRTLADASNQRHGLSAPQIVFTVVGFCVTVATTVFITTYAKRHLKQLQNEDDELLQRVNFESLAEYEIDELFEGAGLASLYRLSGSYWLLEFEISHENIRNPAKSLSFNWLIQRIVEHYGLPILDEEPRIEEKATDVYNKLKVDRLGLNKVEELWCYALNEEEYFQVQMEKSLLTIGWIHVRDWESGGRDGIREGTGTREGTGTREGGTGSEIPVLPGTGSMVPGTVDRYRVEPVPIALDRVRSGATYTCTGPGTERPVPVRLLLAKVHPRSSLLPPFLNPETETFTVWMKSLLYHSNGFTVFNSNGDIAYRVDNYETKCSNEVHLMDLHGQTLFSIILKKKLYVFGRWEAYRWSGSEMNEKPFFKARKLMGGCSCQITVGSEKYRILKKAGGISFRIINMNGDTVAEAKQKLSSSGVVLGDDVLSLEVKPRTDSSFIMALVIVHGLINHQM 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4765144 4778813 - BLOR11385 Blo03g00204 57668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00204 673 Pfam LURP-one-related 497 665 IPR007612 -
Blo03g00204 673 PANTHER SNARE ASSOCIATED GOLGI PROTEIN FAMILY 13 190 - -
Blo03g00204 673 PANTHER SNARE ASSOCIATED GOLGI PROTEIN FAMILY 190 277 - -
Blo03g00204 673 MobiDBLite consensus disorder prediction 410 439 - -
Blo03g00204 673 Gene3D - 496 673 IPR038595 -
Blo03g00204 673 PANTHER EXPRESSED PROTEIN 190 277 - -
Blo03g00204 673 PANTHER EXPRESSED PROTEIN 13 190 - -
Blo03g00204 673 SUPERFAMILY Tubby C-terminal domain-like 498 671 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00204 - - - jre:109010875 357.451
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00717 Blo-Chr1:8999761 Blo03g00204 Blo-Chr3:4765144 3.95E-13 dispersed
Blo02g01072 Blo-Chr2:41095876 Blo03g00204 Blo-Chr3:4765144 1.26E-148 dispersed
Blo02g01181 Blo-Chr2:43506048 Blo03g00204 Blo-Chr3:4765144 3.37E-51 dispersed
Blo03g00204 Blo-Chr3:4765144 Blo09g00047 Blo-Chr9:736722 2.24E-23 dispersed
Blo05g00139 Blo-Chr5:1250431 Blo03g00204 Blo-Chr3:4765144 1.13E-20 dispersed
Blo03g00204 Blo-Chr3:4765144 Blo03g00269 Blo-Chr3:5584918 2.89E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g343 . Blo03g00204 . . . . . Bma14g00616 . . Cma02g01467 Cma15g01217 . Car15g01097 . . Cpe05g00320 . . . . . . . . . . . . . . . . . . . . Chy09g01208 . . . Bda07g00476 . . Bpe11g00653 . . . Cmo02g01504 Cmo15g01282 . . . . . . Bhi12g00231 . . . . . . Cla01g00279 Cam01g0289 Cec01g0282 Cco01g0295 Clacu01g0288 Cmu01g0275 Cre09g2232 Lsi09g00277 . . Cme09g01745
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006552 1 0 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00204 Blo_Chr03 FPKM 76.052063 79.439537 52.448124 54.599476 70.145386 80.484734 69.098297 43.086479 50.353722 45.035351