Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00217 ATGTTCAGATCCAAAGCTGCCCTCGCCGGAGATTTGTTCGTCCGGAATCCTCTAGACCGACCGCTATCGGAGCAGTTTGTCACCGGGAACGAAAATCTGTTCGTCGTCGGAAACCAGAGTCGGGTTCGGCCTCGGAGTCGCTCCGTCACAGATCTGGAGTCGCCGTTCGCCGGAGTCGAAGGATCGGCTCAACTCGGAGTTCCGGCCGCAGATCTGTACTCGCCGGATCTGCTCGAGATCGGGAGTTCGTCGTTCGGGGAAACGGCCGTCGGCTCTCGGCCGACGTCGCACGGGTTGCGGGTCTTGGAGTGGGGTGATGGATTTTACAATGGAGATATCAAGACGAGAAAAACAGTTCAAGCAATGGAAATTGATGCTAATCAGATTGTTTTTCAACGGAGTGAACAATTAAGAGACCTATACGAGTCTCTTTCCATCGGAGAAGCAAGCCCCCGAGCTAAACGCCCTTCGGCCGCATTATCCCCCGAAGATCTCACTGATGCCGAATGGTATTACTTGGTTTGCATGTCCTTCATATTCAACACTGGACAAGGATTGCCTGGAAGAACATATACTACTGGTCAACCCATCTGGCTGTGCAATGCTCATGCTGCAGATAGCAAAGTTTTCAGTCGCTCTCTGCTGGCGAAGACTGTTGTGTGTTTTCCCTTCCTAGATGGTGTGGTGGAGCTTGGAGTGACTGACTTGGTCTTTGAGGATCCCGGCCTCATTCAACGCCTTAAAACTTCTTTTTTGGATGCTCCGTTTTCATTCAGTTCTTCGGCCGTAAAACCGAGAAATGGTGAAAATATTCTGAGCACTGCACCCGATTGTAAGATCTTTGAAACTAAAGAAGTCTCGGCCGTACATCGTGCAGAGCCTGATATGACTTCTCCAAGCAACGGTTCGAATCGAATGGAAAGCAATCAACTCGCAGAAGGCTCGTTTATTGGTGAGGGGCGAAGTAGAGGAGCTTCTCAAGCACAAAGCTGGCAGTTGATGGATGATGGGATAAGTAACTGCGCCCATCAGTCCGTAAATTCTAGTGATTGTATATCTCAGACCCTTGTCGAGCCTGAAAAAGTCAGCTCCGATGCGAATAGAGAAAAAGTCAAAAACCACTTGCCAAATCAAGAGGATCATTGCCCGAAACGAAACTTGTGGGCACCACAGAAGGACGATCTACATTATCGACTGATTCTCAGTAACCTTTTTAACAGCTCAAACGGGTCGATGTTAGGATCACTAGCTCGATATTGTCGAAAAGATTCGAGCTTTATCAGTTGGAAACAAGGCCTATTGAGTTTGAAAATTCCAAGAGGCAGAGCTCCACAAATTCGATTGAAGAAGATTTTGCTCGAAGTTCCTCGATGGGTTGCTCGTATTTCGGCTGCTTCTCCCGAGAGTTGTGGTTATAAGACGGAAACTCAGATTCAAGAAGCCGACAAAATCGGAACTAACCATGCATTGTCAGAGAAGAGGCAAAGAGATAAACTTAATGAAAAATTTTTCATTTTAAGATCTCTAATCCCTTCAAATAATAAGTACGATGAAGTTATGATACTCGATGAAGCAATTGATTATTTGAAACAACTCGAACGAAGAGTTAAAGAGTTAGAATCTGTCCAAGACCTAACGGAATCAGAGACAAGAACATCCGACAACTATGGAAACGACAAAAAAACTAGTAATAATACAAGGAAATCCCCACCGACGAAGAGGAAGGCTTGTCATGTGATAGAAATGGAGGAGACGGACGAAAGCTTGGACGAGTCGATAAACGTTTCTATAACCAACAAGGAAGTTATGATTAGACTGAGATGTGCTTGGAGGGATGGTGTTTTGCTGGATATCATGGATGCTATTAGCAATTTTCATTTAGATTCTTATTCAGTTCAGTCATCCACTGCAGAGGGAATTCTTTCTCTTACGATCAAGTCGAAGGTAATTTGTCACACTCTTAGCCTCAACCTCAACCAGAAACAGACTCGCCCTGTGATCATAGACGAAGGACAACTGAGTTCATTCTCGCTCAGTTTTAGGACAATGCACCAGCCGTGGTTGAAGCACAATCCAAGGTTGAAGTACAAGCACAATCTGAGGACTGCGGCAGTGAACGATACATATGAAGCCAATATTAAATATCGTTCGATCATTGTATCTAGAAGAGTATACTTTGATTCATTGGCTGATTTGGGAATTGAAGAATTGGTTGAGAGGGCTGGCTTAGCCAGCTATGTGATTTTGAATCACATGTACGATGTCATCAATAACCTGGTCAAGAGTCTACCATTTAATTGGCTCATTCAAAGGATTGTTGAGCATAACGGGGTATCAGTCTTAGATGGGGAGCTGAGAATCCAAGAGAAGGCTTATGACATCTACAATAAATTGAAAGTGGACCGCATGTGGAACACCAAAGTTGGAGGGAAATGGATATGTAAGACTCCATTCAAGCTCGCCTCGAACACTCAAGCAAAAGTTTCCCATCCTCCAGCCCCCTCAGCCATAGTGGCTCTCATTCGTTCATCGATAGACGTCTCGGGTGGAATACAACCTCCACTTAAAGCTTTGCACGTGCATGGTGACCTGATGAATATTTTCACGAGATTGACGGGTGCAAACACGAAGAAAAACTTAGAGACCTGTGCATTTCTCGTAGGGGTTATGTTAAATGATGAGTATCACATCACTAATCTCATCCTCCCGAAGCAAGAAGTGACAACAGACATAAAGATGTCAGAATCACAGATTTCAGCCCAGCTCCCAGTTTTGGATTTATCAAAACAGATCAACCCGACCGTACTATCTTCTCTTGCAGAAGCATGTGAAGAATGGGGTTTCTTCTACGTCACCAACCATGGCGTCTCTGAAAATCTCTGCAGCAAACTTTTTTCATTCTCCAAGAAAATCTTCAGCCTTCCTCTGGATTCGAAACTCAAGCTCGGCCCTTCTTCCCATCTCAAAACCTACACTCCACCCTTCTTAGCATCTCCTTACTTCGAAAGCCTGCTGGTTTCTGGGCCAGATTTCGTCACCTCCGCCGAGAGTTCTATCACTGAACTCTTCGGCCGCCACAATTCTGAAAGCAGTGAGTTGCTGCAAGAATATGGAAGCAAGATGGCAGAATTATCAAAGAGGATTGTTTCTGCTGTGTTGATGGGGTTAGGAGAGCGTTATGAAAGGCAGTTTTACGAATCTGAGTTTAGTAAATGCCATGGCTATTTGAGAATAGTGAACTATACAGCACCAGAGAAAAAAGAAGAAGAAGAAGTGGAAGGGCTTGGAATGCACACTGATATGAGCTGCCTGACCATAGTCTACCAAGATGAAGTAGGTGGGCTGCAGATGAGATCAAAGAGTGGAAAATGGATGGATATCAAACCATGTGAGAAATGCTTAGTTGTTAACGTAGGCGATCTGATGCAGGCGTGGACTAACGGAAGGTTTAGATCGTCCGAACACCGAGTCGTTTTGAAGAATCGGGCGGTGAATCGTCGCTCGTTGGCCTTCTTTTGGTGCTTTGAGGACGAGAAGCTGATCTCGGCCCCGGACGAAGTCGTGGGGGAAGACAAGTCGAGAATTTACGTGCCGTTTGTTTGTTCGGATTATCTCAAATTTAGAGAAAGCAATGAAGTAGGCAAATTCGATAGAATTAGCTATTCAGTCAATGATTTTGCACTGAATTTAGACGATGATCAATAA 3705 44.94 MFRSKAALAGDLFVRNPLDRPLSEQFVTGNENLFVVGNQSRVRPRSRSVTDLESPFAGVEGSAQLGVPAADLYSPDLLEIGSSSFGETAVGSRPTSHGLRVLEWGDGFYNGDIKTRKTVQAMEIDANQIVFQRSEQLRDLYESLSIGEASPRAKRPSAALSPEDLTDAEWYYLVCMSFIFNTGQGLPGRTYTTGQPIWLCNAHAADSKVFSRSLLAKTVVCFPFLDGVVELGVTDLVFEDPGLIQRLKTSFLDAPFSFSSSAVKPRNGENILSTAPDCKIFETKEVSAVHRAEPDMTSPSNGSNRMESNQLAEGSFIGEGRSRGASQAQSWQLMDDGISNCAHQSVNSSDCISQTLVEPEKVSSDANREKVKNHLPNQEDHCPKRNLWAPQKDDLHYRLILSNLFNSSNGSMLGSLARYCRKDSSFISWKQGLLSLKIPRGRAPQIRLKKILLEVPRWVARISAASPESCGYKTETQIQEADKIGTNHALSEKRQRDKLNEKFFILRSLIPSNNKYDEVMILDEAIDYLKQLERRVKELESVQDLTESETRTSDNYGNDKKTSNNTRKSPPTKRKACHVIEMEETDESLDESINVSITNKEVMIRLRCAWRDGVLLDIMDAISNFHLDSYSVQSSTAEGILSLTIKSKVICHTLSLNLNQKQTRPVIIDEGQLSSFSLSFRTMHQPWLKHNPRLKYKHNLRTAAVNDTYEANIKYRSIIVSRRVYFDSLADLGIEELVERAGLASYVILNHMYDVINNLVKSLPFNWLIQRIVEHNGVSVLDGELRIQEKAYDIYNKLKVDRMWNTKVGGKWICKTPFKLASNTQAKVSHPPAPSAIVALIRSSIDVSGGIQPPLKALHVHGDLMNIFTRLTGANTKKNLETCAFLVGVMLNDEYHITNLILPKQEVTTDIKMSESQISAQLPVLDLSKQINPTVLSSLAEACEEWGFFYVTNHGVSENLCSKLFSFSKKIFSLPLDSKLKLGPSSHLKTYTPPFLASPYFESLLVSGPDFVTSAESSITELFGRHNSESSELLQEYGSKMAELSKRIVSAVLMGLGERYERQFYESEFSKCHGYLRIVNYTAPEKKEEEEVEGLGMHTDMSCLTIVYQDEVGGLQMRSKSGKWMDIKPCEKCLVVNVGDLMQAWTNGRFRSSEHRVVLKNRAVNRRSLAFFWCFEDEKLISAPDEVVGEDKSRIYVPFVCSDYLKFRESNEVGKFDRISYSVNDFALNLDDDQ 1234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4926281 4945686 + BLOR11398 Blo03g00217 57681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00217 1234 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 1072 1176 IPR005123 -
Blo03g00217 1234 PANTHER TRANSCRIPTION FACTOR TT8 98 651 - -
Blo03g00217 1234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 483 532 IPR011598 GO:0046983
Blo03g00217 1234 Gene3D Cytidine Deaminase, domain 2 846 927 - -
Blo03g00217 1234 MobiDBLite consensus disorder prediction 540 575 - -
Blo03g00217 1234 Pfam non-haem dioxygenase in morphine synthesis N-terminal 922 994 IPR026992 -
Blo03g00217 1234 SUPERFAMILY Clavaminate synthase-like 919 1211 - -
Blo03g00217 1234 PANTHER TRANSCRIPTION FACTOR EGL1 98 651 - -
Blo03g00217 1234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 486 547 IPR036638 GO:0046983
Blo03g00217 1234 Gene3D - 928 1195 IPR027443 -
Blo03g00217 1234 Gene3D - 485 555 IPR036638 GO:0046983
Blo03g00217 1234 Coils Coil 522 549 - -
Blo03g00217 1234 SMART finulus 489 538 IPR011598 GO:0046983
Blo03g00217 1234 Pfam 2OG-Fe(II) oxygenase superfamily 1077 1172 IPR044861 -
Blo03g00217 1234 Pfam Helix-loop-helix DNA-binding domain 486 533 IPR011598 GO:0046983
Blo03g00217 1234 MobiDBLite consensus disorder prediction 548 565 - -
Blo03g00217 1234 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 97 251 IPR025610 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00217 - - - qsu:112035245 583.178
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g01111 Blo03g00217 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01222 Blo-Chr2:44265461 Blo03g00217 Blo-Chr3:4926281 4.40E-98 dispersed
Blo03g00217 Blo-Chr3:4926281 Blo05g00367 Blo-Chr5:4402259 4.50E-25 dispersed
Blo06g00672 Blo-Chr6:29786731 Blo03g00217 Blo-Chr3:4926281 1.52E-26 dispersed
Blo10g00026 Blo-Chr10:233643 Blo03g00217 Blo-Chr3:4926281 9.17E-43 dispersed
Blo13g00505 Blo-Chr13:26382024 Blo03g00217 Blo-Chr3:4926281 5.72E-27 dispersed
Blo01g00954 Blo-Chr1:24235034 Blo03g00217 Blo-Chr3:4926281 1.94E-34 transposed
Blo01g01069 Blo-Chr1:36674664 Blo03g00217 Blo-Chr3:4926281 8.22E-06 transposed
Blo02g00356 Blo-Chr2:3863423 Blo03g00217 Blo-Chr3:4926281 2.84E-129 transposed
Blo07g00687 Blo-Chr7:22419684 Blo03g00217 Blo-Chr3:4926281 3.13E-14 transposed
Blo14g00834 Blo-Chr14:29639199 Blo03g00217 Blo-Chr3:4926281 1.47E-06 transposed
Blo02g01111 Blo-Chr2:42174461 Blo03g00217 Blo-Chr3:4926281 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g317 Blo02g01111 Blo03g00217 Bda06g00113 Bda08g00368 Bpe05g00647 Bpe07g00106 . . Cmo06g01033 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0782 Cone9ag0786 . . . Cme06g02703 . . Bda07g00480 . . . . Bma12g00073 . . . Cma06g01013 . Car06g00850 . Cpe08g00597 . . . . . . . . . . . . . . . . Csa03g00375 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003574 4 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 3 2 2 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12095 PF14215 bHLH-MYC_N 8.30E-35 CL0161 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00217 Blo_Chr03 FPKM 46.226734 44.944656 23.955395 21.907528 8.324559 8.221666 8.038279 26.933128 24.467422 28.119873