Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00222 ATGTTGGAACAGTGGAATGAGCGCTTAGAGTATTCAGAGGCTAAGCATGACGAGGTCATGTTGGCATTGAGTCATTTGATGCCACCAAAATCGGATGTGCGACAGAAGCTATATACGCTAGCTCAAGGGGAGACATCCAACCCTCCCGTTCCGATAATTCCCAGGCCACATGAAGGTTACAGACCAAATAAGTCTTATATGCATAGACTACCGCGATTGGATTTTTCAATCTTTACAGGCAATGGCCATGGTGAAGATTCTCCTTATTTTGATGGCTGGAAGGCGTACGATAGCGACCCTTTTCATCTTAAACTGAACCGTCGTGGAGTTATCCAGATGGGTCTCGCGGAGAATCTGCTATCAATGGATTTGGTTCAAGAGTGGCTCTTGAAAAACCCACAAGCCTCCATTTGCAGTGCAGAAGGAGTGAATGCGTTCAGCGAGAAGGCTATTTTCCAGGATTATCATGGCTTACCAGAGTTCAGAAACGCTGTCGCTAAATTCATGGGGAGGACGAGGGGGGATAGGGCGAGCTATGATCCTGATCGGATTGTGATGAGCGGCGGGGCGACCGGTGCTCATGAAATGTTGGCTTTCTGTCTGGCTAATCCTGGAGAAGCTTTTCTTGTTCCTACTCCTTATTATCCTGGATTCGATCGAGATTTAGGATGGAGAACAGGAGTAAAACTTCTTCCGGTCGTCTGCGAAAGCTCAAACAACTTCAAAATAACAACAAAATCTCTCCAAACAGCCTTCGAAAAAGCTCGAGCATCCAACGTCCAAATCAAAGGCTTGCTCATAAACAACCCCTCAAATCCACTCGGTACAGTTTTAGACTCAGAAACCCTCAAAAACCTCGTCGCCTTCGTCAACCAAAACAACATCCACCTAATCTGCGACGAAATCTACGCAGCCACTGTCTATTCCCGACCGAACTTCATCAGCATCTCAGAAATAATCGAAGAAGACCCCCACTGCAACAGAAATCTCATTCACATAGTTTATAGTCTCTCAAAAGACTTGGGATTTCCAGGCTTTAGAGTTGGAATTGTGTATTCTTACAACGACCAAGTTGTTCAGATCGCCAGAAAGATGTCCAGTTTCGGCCTCGTTTCAACCCAATCCCAACACTTGATAGCCGGAATGCTGTCTGACGACTCCTTCATCGACTCCTTCATCGGAGAAAGCTCTCGGAGATTAGGAGCCAGACAGAAGATGTTCACGAAAGGGCTAGCCAAGGTGGGAATAGAGTGTTTGAAGAGCAACGCCGGGCTATTTCTGTGGATGGATTTACGTCATCTCTTGAAAGAGAAGACATTCGACGCAGAAATGGCGTTGTGGAAACTGATAATCAATGAGGTAAAGCTGAACGTTTCGCCTGGTTCTTCGTTCCATTGCTCTGAGCCAGGCTGGTTCAGGGTTTGTTTTGCTAACATGGAAGAAGAAACCATGGGAGAAGCTTTGAGGAGAATAAGATTGTTTGTTCTGCAAAACAAGGAGGTCAAGACGAAGAAGAGACAGCGGTTTTGCTGGCAGAGTAATCTGGATCAGCTCCTGCTCTCTCCCAGAAGATTGGACGACGTACTCATGTCCCCTCATTCGCCAGTTCCTCAGTCACCTCTCGTTCTAGCCGCCACATAG 1641 46.62 MLEQWNERLEYSEAKHDEVMLALSHLMPPKSDVRQKLYTLAQGETSNPPVPIIPRPHEGYRPNKSYMHRLPRLDFSIFTGNGHGEDSPYFDGWKAYDSDPFHLKLNRRGVIQMGLAENLLSMDLVQEWLLKNPQASICSAEGVNAFSEKAIFQDYHGLPEFRNAVAKFMGRTRGDRASYDPDRIVMSGGATGAHEMLAFCLANPGEAFLVPTPYYPGFDRDLGWRTGVKLLPVVCESSNNFKITTKSLQTAFEKARASNVQIKGLLINNPSNPLGTVLDSETLKNLVAFVNQNNIHLICDEIYAATVYSRPNFISISEIIEEDPHCNRNLIHIVYSLSKDLGFPGFRVGIVYSYNDQVVQIARKMSSFGLVSTQSQHLIAGMLSDDSFIDSFIGESSRRLGARQKMFTKGLAKVGIECLKSNAGLFLWMDLRHLLKEKTFDAEMALWKLIINEVKLNVSPGSSFHCSEPGWFRVCFANMEEETMGEALRRIRLFVLQNKEVKTKKRQRFCWQSNLDQLLLSPRRLDDVLMSPHSPVPQSPLVLAAT 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5036384 5042946 - BLOR11403 Blo03g00222 57686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00222 546 Gene3D - 133 385 IPR015421 GO:0003824
Blo03g00222 546 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 146 162 - -
Blo03g00222 546 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 330 354 - -
Blo03g00222 546 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 113 139 - -
Blo03g00222 546 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 205 226 - -
Blo03g00222 546 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 295 318 - -
Blo03g00222 546 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 183 203 - -
Blo03g00222 546 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 259 283 - -
Blo03g00222 546 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 362 385 - -
Blo03g00222 546 CDD AAT_like 152 492 - -
Blo03g00222 546 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 77 506 - -
Blo03g00222 546 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 77 506 - -
Blo03g00222 546 Pfam Aminotransferase class I and II 111 491 IPR004839 GO:0009058|GO:0030170
Blo03g00222 546 Gene3D Aspartate Aminotransferase, domain 1 99 490 IPR015422 GO:0003824
Blo03g00222 546 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 336 349 IPR004838 GO:0003824|GO:0009058|GO:0030170
Blo03g00222 546 SUPERFAMILY PLP-dependent transferases 83 493 IPR015424 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00222 K20772 ACS1_2_6; 1-aminocyclopropane-1-carboxylate synthase 1/2/6 [EC:4.4.1.14] - jre:108983882 719.153
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g01120 Blo03g00222 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00222 Blo-Chr3:5036384 Blo16g00329 Blo-Chr16:8876202 0 dispersed
Blo06g00854 Blo-Chr6:31789923 Blo03g00222 Blo-Chr3:5036384 1.16E-21 dispersed
Blo10g00958 Blo-Chr10:28642004 Blo03g00222 Blo-Chr3:5036384 8.98E-19 dispersed
Blo12g00239 Blo-Chr12:15191370 Blo03g00222 Blo-Chr3:5036384 0 transposed
Blo02g01120 Blo-Chr2:42421193 Blo03g00222 Blo-Chr3:5036384 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g40 Blo02g01120 Blo03g00222 Bda06g00119 . . Bpe07g00098 . . . Cmo16g00632 . . . . . Cpe14g00493 . . . . . . . . Cla07g00752 Cam07g0805 Cec07g0867 Cco07g0843 Clacu07g0787 Cmu07g0794 Cre07g1146 . . . Cone9ag0808 . . . Cme07g01616 . . . . . . . Bma12g00069 . . . . Cma16g00582 . . . . . . . . . . . . . . . . . . . Csa04g00609 Chy07g01202 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001626 1 2 3 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 5 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00222 Blo_Chr03 FPKM 21.31024 22.250853 7.686501 9.313272 3.422791 3.649084 3.760522 28.612974 26.539217 27.136061