Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00235 ATGGCTGGGAATGCAACAGTTTGTCCAGCGCCAATGAAAGCCACCTCCAATGGCTTGTTTCAAGGAGATAATCCTCTTCATTTTTCTCTACCCCTTGTCATCGTGCAGATATGCCTCGTGGTTATTCTCACTCGTCTTCTTGCTTTTATTTTCCGTCCATTGAGACAGCCTCGGGTGATTGCTGAGATTGTTGGAGGAATATTACTTGGTCCATCAGTTTTGGGTCGAAACACGCACTATTTAAACACAATTTTCCCAGCAAAAAGCCTCACAGTCTTAGACACCTTAGCCAATATGGGCCTCCTCTTCTTCCTCTTCCTCGTAGGCCTGGAGTTAGACCCAAAATCTCTCCGCCGAACTGGTAAAAAAGCTTTAAGCATAGCAGCGGCAGGAATATCCCTTCCATTTCTTCTGGGAATTGGAACATCTTTTGTGCTCAAAGGAACTATTTCTAAAGGAGTCAATGGACCTCCTTTTCTTGTTTTCATGGGTGTTGCTCTGTCTATCACAGCCTTCCCTGTCTTAGCTCGTATTTTAGCCGAACTCAAGCTCTTAACCACTGATGTGGGCCGAATGGCCATGTCCGCAGCAGCAGTAAACGATGTCGCAGCTTGGATTCTCCTCGCTCTCGCCATTGCCCTTTCTGGAACTGATCGTTCGCCTCTTGTCTCTCTCTATGTTTTCTTATGTGGTAGTGCCTTTGTCGTTGTTTGTATATTCTCTTGTCCCCGCATTTTCAAATGGATGGCTCGGCGATGTCCAGATGGTGAGCCGGTCAATGAATTATACGTCTGTGCCACTTTAGTCATTGTTTTGGCGGCCGGCTTTATCACAGATATGGTCGGAATTCATGCCATTTTCGGCGCGTTTGTGATCGGAGTTCTTGTGCCGAAGGAAGGGCCATTTGCAGGGGCTCTAGTGGAAAAAGTTGAGGATCTGGTTTCGGGCTTGTTCCTTCCTTTATACTTTGTTTCAAGTGGTTTGAAGACTAATATAGCTACCATTCAAGGAGCTCAATCATGGGGCCTCCTCGTTTTAGTCATTGTTACAGCTTGCTTTGGGAAAATTGTGGGTACTTTGATTGCTTCCTTCCTCTGCAAGATGCCTTTTGCTGAAGCAGTGACCCTAGGATTCTTGATGAACACCAAAGGGTTGGTCGAGCTCATTGTCCTCAACATTGGAAAAGACAGAAAGGTACTAAATGATCAAACTTTTGCCATCATGGTTCTAATGGCGATCTTCACGACCTTCATCACCACTCCGATAGTTATGGCGGTTTATAAACCGGCCAAAAGGGCGAGTAGGGAGGATTACAAGATCAGAACAGTCGCCAGAAAAAAGCCGAACACTCAGCTGAGGATTTTAGCCTGTTTCCACACCAATAGAAACATACCCACCATGATTAACCTCATTGAAGCTTCTCGAGGAACAGATAAGAGGGAAGGACTCTGCGTATATGCACTGCACATGCTCGAACTCTCAGAGAGATCTTCCGCCATTTTAATGGTCCACAAAGCTAGAAAGAACGGATTGCCGTTCTGGAATAAAGGGCCCCGATCAGACTCTGACCAAGTCATCGTTGCTTTCGAAGCTTTCCGGCAGCTTAGCAGAGTCTCAATTCGTCCGATGACGGCGATATCTTCCTTGTCGGAAATGCACGATGATATCTGTGGAAGTGCAGAGAGAAAAAGAGCAGCGATCATAATCCTTCCGTATCATAAGCATCAGAGAATCGACGGGACTTTCGAGACTACTATGCCGGAGTACCGATTAGTTAACCGGAGAGTTCTGGATCACGCTCCCTGTTCCGTTGGAATCCTGATCGATCGGGGGCTCGGAGGAGGCAGCCATGTCTCGGCAAGCAATCTTTCCTCAAGCTTGACTGTTATCTTCTTCGGCGGCCGAGACGACCGCGAAGCTCTCGCTTATGGGTGTAGAATGGCGGAGCATCCCGGAATTACTCTCACTCTCGTTCGCTTCCTTGAAGGCTCCGAAGCCACCCGAGAAATCCCCGGTGTCGAGATCAATCCAACTTCAATCCCCCATTCAACGGAAATGGAGGACGATGAAGCAATTAACGAATTCAAGAACATAATGAAAACCGCCGGAGAAGAGTCGATCAAGTATATAGAGAGAGTGGTAAGAAACGGAATGGAGACCATTGACGCAATCAGAGAGTCCAGTAAATGCAATCTCATCTTAATCGGAAAAAATCCGGAAGGGAGAGTAGTTTCCGCCATTAACGTGAAGATGGACCACTGTGAGCTCGGCCCAGTCGGAAACGTACTGACCTCACCGGAATGCTCAACGGGGGCGTCGGTGTTGGTTGTTCAGCAGTACCATGGTCAGAGAGTAATATCAAGTTCCGGTGGAGTTTCAGGGACAGTAGTTTTGCCTGAGGAAGACCCAGAAATGCGCTGA 2421 47.38 MAGNATVCPAPMKATSNGLFQGDNPLHFSLPLVIVQICLVVILTRLLAFIFRPLRQPRVIAEIVGGILLGPSVLGRNTHYLNTIFPAKSLTVLDTLANMGLLFFLFLVGLELDPKSLRRTGKKALSIAAAGISLPFLLGIGTSFVLKGTISKGVNGPPFLVFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGTDRSPLVSLYVFLCGSAFVVVCIFSCPRIFKWMARRCPDGEPVNELYVCATLVIVLAAGFITDMVGIHAIFGAFVIGVLVPKEGPFAGALVEKVEDLVSGLFLPLYFVSSGLKTNIATIQGAQSWGLLVLVIVTACFGKIVGTLIASFLCKMPFAEAVTLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAIFTTFITTPIVMAVYKPAKRASREDYKIRTVARKKPNTQLRILACFHTNRNIPTMINLIEASRGTDKREGLCVYALHMLELSERSSAILMVHKARKNGLPFWNKGPRSDSDQVIVAFEAFRQLSRVSIRPMTAISSLSEMHDDICGSAERKRAAIIILPYHKHQRIDGTFETTMPEYRLVNRRVLDHAPCSVGILIDRGLGGGSHVSASNLSSSLTVIFFGGRDDREALAYGCRMAEHPGITLTLVRFLEGSEATREIPGVEINPTSIPHSTEMEDDEAINEFKNIMKTAGEESIKYIERVVRNGMETIDAIRESSKCNLILIGKNPEGRVVSAINVKMDHCELGPVGNVLTSPECSTGASVLVVQQYHGQRVISSSGGVSGTVVLPEEDPEMR 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5160484 5163141 - BLOR11416 Blo03g00235 57699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00235 806 PANTHER CATION/H + ANTIPORTER 5 787 - -
Blo03g00235 806 PANTHER CATION/H(+) ANTIPORTER 18 5 787 - -
Blo03g00235 806 Gene3D - 32 437 IPR038770 -
Blo03g00235 806 Pfam Sodium/hydrogen exchanger family 39 422 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Blo03g00235 806 Gene3D - 479 747 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00235 - - - jre:108997299 1159.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01126 Blo-Chr1:40554358 Blo03g00235 Blo-Chr3:5160484 0 dispersed
Blo02g01131 Blo-Chr2:42644316 Blo03g00235 Blo-Chr3:5160484 0 dispersed
Blo03g00235 Blo-Chr3:5160484 Blo05g00511 Blo-Chr5:8749897 0 dispersed
Blo03g00234 Blo-Chr3:5154183 Blo03g00235 Blo-Chr3:5160484 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g77 . Blo03g00235 . . . Bpe07g00084 . . . . . . . . . . . . . . . . . . Cla07g00713 Cam07g0769 Cec07g0837 Cco07g0811 Clacu07g0753 Cmu07g0762 Cre07g1116 . . . Cone9ag0826 . . . . . . . . . . . Bma12g00055 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00628 Chy07g01185 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo05g00511 . 11 811 Antiporter Super Family AT2G13620 73.5 0.0e+00 1178.7
Blo01g00795 . 211 967 Antiporter Super Family AT2G13620 67.7 4.3e-295 1010.7
Blo03g00235 . 7 782 Antiporter Super Family AT2G13620 50.4 1.4e-213 740.0
Blo02g01131 BCT 4 771 Antiporter Super Family AT2G13620 50.8 3.0e-211 732.3
Blo01g01126 . 76 818 Antiporter Super Family AT3G53720 69.8 3.4e-294 1007.7
Blo03g00234 BCT 81 779 Antiporter Super Family AT3G53720 51.1 1.1e-188 657.1
Blo03g00235 . 80 785 Antiporter Super Family AT3G53720 50.5 5.3e-186 648.3
Blo03g00235 . 1 804 Antiporter Super Family AT5G41610 67.4 1.9e-303 1038.5
Blo02g01131 BCT 1 788 Antiporter Super Family AT5G41610 67.2 1.6e-297 1018.8
Blo03g00234 BCT 1 779 Antiporter Super Family AT5G41610 67.0 2.3e-296 1015.0
Blo05g00511 . 11 797 Antiporter Super Family AT5G41610 50.8 2.5e-215 745.7
Blo01g01126 . 1 801 Antiporter Super Family AT5G41610 50.9 9.4e-210 727.2
Blo02g01131 BCT 1 769 Antiporter Super Family AT4G23700 68.1 6.6e-296 1013.4
Blo03g00235 . 1 801 Antiporter Super Family AT4G23700 65.2 8.1e-294 1006.5
Blo03g00234 BCT 7 779 Antiporter Super Family AT4G23700 61.5 3.0e-272 934.9
Blo03g00235 . 8 780 Antiporter Super Family AT3G17630 64.9 5.1e-277 950.7
Blo02g01131 BCT 1 769 Antiporter Super Family AT3G17630 65.0 2.4e-274 941.8
Blo03g00234 BCT 9 778 Antiporter Super Family AT3G17630 63.4 1.3e-272 936.0
Blo05g00511 . 11 793 Antiporter Super Family AT3G17630 50.6 4.9e-219 758.1
Blo01g01126 . 8 803 Antiporter Super Family AT3G17630 51.5 1.1e-207 720.3
Blo02g01131 BCT 1 783 Antiporter Super Family AT1G64170 58.5 6.4e-243 837.4
Blo03g00235 . 5 783 Antiporter Super Family AT1G64170 59.3 3.2e-242 835.1
Blo03g00234 BCT 9 779 Antiporter Super Family AT1G64170 55.4 1.4e-229 793.1
Blo05g00511 . 11 811 Antiporter Super Family AT2G13620 73.5 0.0e+00 1178.7
Blo01g00795 . 211 967 Antiporter Super Family AT2G13620 67.7 4.3e-295 1010.7
Blo03g00235 . 7 782 Antiporter Super Family AT2G13620 50.4 1.4e-213 740.0
Blo02g01131 BCT 4 771 Antiporter Super Family AT2G13620 50.8 3.0e-211 732.3
Blo02g01131 BCT 1 783 Antiporter Super Family AT1G64170 58.5 6.4e-243 837.4
Blo03g00235 . 5 783 Antiporter Super Family AT1G64170 59.3 3.2e-242 835.1
Blo03g00234 BCT 9 779 Antiporter Super Family AT1G64170 55.4 1.4e-229 793.1
Blo02g01131 BCT 1 769 Antiporter Super Family AT4G23700 68.1 6.6e-296 1013.4
Blo03g00235 . 1 801 Antiporter Super Family AT4G23700 65.2 8.1e-294 1006.5
Blo03g00234 BCT 7 779 Antiporter Super Family AT4G23700 61.5 3.0e-272 934.9
Blo03g00235 . 1 804 Antiporter Super Family AT5G41610 67.4 1.9e-303 1038.5
Blo02g01131 BCT 1 788 Antiporter Super Family AT5G41610 67.2 1.6e-297 1018.8
Blo03g00234 BCT 1 779 Antiporter Super Family AT5G41610 67.0 2.3e-296 1015.0
Blo05g00511 . 11 797 Antiporter Super Family AT5G41610 50.8 2.5e-215 745.7
Blo01g01126 . 1 801 Antiporter Super Family AT5G41610 50.9 9.4e-210 727.2
Blo03g00235 . 8 780 Antiporter Super Family AT3G17630 64.9 5.1e-277 950.7
Blo02g01131 BCT 1 769 Antiporter Super Family AT3G17630 65.0 2.4e-274 941.8
Blo03g00234 BCT 9 778 Antiporter Super Family AT3G17630 63.4 1.3e-272 936.0
Blo05g00511 . 11 793 Antiporter Super Family AT3G17630 50.6 4.9e-219 758.1
Blo01g01126 . 8 803 Antiporter Super Family AT3G17630 51.5 1.1e-207 720.3
Blo01g01126 . 76 818 Antiporter Super Family AT3G53720 69.8 3.4e-294 1007.7
Blo03g00234 BCT 81 779 Antiporter Super Family AT3G53720 51.1 1.1e-188 657.1
Blo03g00235 . 80 785 Antiporter Super Family AT3G53720 50.5 5.3e-186 648.3
Blo06g00594 . 35 744 Antiporter Super Family AT3G52080 55.4 2.2e-219 759.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000528 2 8 3 3 2 4 4 4 4 4 4 4 4 3 3 4 4 5 2 4 4 2 2 3 4 4 2 5 5 5 111
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00235 Blo_Chr03 FPKM 23.409048 24.870787 40.078156 37.217804 11.583149 10.351768 11.81007 23.69758 23.217319 23.749826