Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00240 ATGAACGACGCAGATGTATCTAAGCAGATCCAGCAGATGGTGAGGTTTATCCGCCAGGAAGCGGAGGAAAAAGCGAACGAGATCTCTGTTTCTGCCGAAGAAGAATTCAACATCGAGAAGTTGCAGCTGGTTGAGGCAGAAAAGAAGAAGATCAGACAAGAGTACGAGAAAAAGGAGAAGCAAGTCGAAGTCCGGAAAAAGATTGAGTATTCTATGCAGCTTAATGCTTCTAGAATTAAAGTTCTCCAAGCTCAAGATGATGTTGTCAACTCCATGAAAGAAGCAGCATCAAAGGAACTTCTAAGCGTCTGCCACAACCAGCATGGATACAAAAATCTCTTGAAAGATCTCATAGTTCAGGATTTTAAAGAAATGTTCATGGATAGATTCGGTCATTCAAGGAGAGGAAACTACTGTGATCGCCTTTTCTCACTTCGGCAAGAGGGGATGGTGGAAGAATACAACATAAAATTTGAGTATGTAGTTTTAAGTTTGTTTGGGATTCTTGATGATGTGTTGTTTAGTTCTTTTTTTAATGGGTTGAAAAATGAAATTAAAGGAGAAGCAAAATTAATAAGGCCAGTGGGCATGCTAAATTTAATGGAATCTTCTCAAATAATGTCATTTAGACGTACTAATGCACCGTCCACGTTCCAATCTTTGATTAATAAGATATTTTACCAATTCTTTCAAATTGATGTTTTTCATGACATTTTAGTATATAGTTGTTTGGTTGAAAAACATTTAGAACATTTCAACATAGCTCTACAAATGCTGTCAACACATCAATGCTTAAAAAATATCAGTTTTGTTAGCTTGCTTCGACTGAAAGAGCCAGCTGTATTGCTGCGATGTCGGGAAGAAGACCTTCAATTGGTTGAGGATGTGATACAATCTGCAGCGAAGGAATATGCTCAAAAAGCAAGTGTTCATCCTCCGGAAATTATAGTTGACACTCATGTTTTTCTACCACCTGCTCCAAGCCATTTCAATGCTCATGGTCCATATTGCTCTGGAGGTGTAGTGTTGGCATCCCGAGATGGAAAGATTGTTTGTGAGAACACCCTCGACGCAAGGTTGGATGTCGTGTTTCGTAAAAAACTTCCAGAGTTCCATTACTTCGGGAAGGATGACTGCGAACTGGAACTGCATGTTTTTTCGCCAATTGCCAATTAA 1176 39.12 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVEVRKKIEYSMQLNASRIKVLQAQDDVVNSMKEAASKELLSVCHNQHGYKNLLKDLIVQDFKEMFMDRFGHSRRGNYCDRLFSLRQEGMVEEYNIKFEYVVLSLFGILDDVLFSSFFNGLKNEIKGEAKLIRPVGMLNLMESSQIMSFRRTNAPSTFQSLINKIFYQFFQIDVFHDILVYSCLVEKHLEHFNIALQMLSTHQCLKNISFVSLLRLKEPAVLLRCREEDLQLVEDVIQSAAKEYAQKASVHPPEIIVDTHVFLPPAPSHFNAHGPYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEFHYFGKDDCELELHVFSPIAN 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5210447 5217420 - BLOR11421 Blo03g00240 57704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00240 391 SUPERFAMILY V-type ATPase subunit E-like 263 371 - -
Blo03g00240 391 Gene3D - 1 62 - -
Blo03g00240 391 Coils Coil 38 61 - -
Blo03g00240 391 Pfam ATP synthase (E/31 kDa) subunit 16 125 IPR002842 GO:0033178|GO:0046961|GO:1902600
Blo03g00240 391 Pfam ATP synthase (E/31 kDa) subunit 263 370 IPR002842 GO:0033178|GO:0046961|GO:1902600
Blo03g00240 391 PANTHER BNAC03G72900D PROTEIN 1 120 - -
Blo03g00240 391 PANTHER BNAC03G72900D PROTEIN 262 375 - -
Blo03g00240 391 Gene3D - 249 377 IPR038495 -
Blo03g00240 391 SUPERFAMILY DNA/RNA polymerases 206 265 IPR043502 -
Blo03g00240 391 PANTHER ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED 1 120 IPR002842 GO:0033178|GO:0046961|GO:1902600
Blo03g00240 391 PANTHER ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED 262 375 IPR002842 GO:0033178|GO:0046961|GO:1902600
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00240 K02150 ATPeV1E, ATP6E; V-type H+-transporting ATPase subunit E - csv:101217221 203.371
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g01135 Blo03g00240 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00240 Blo-Chr3:5210447 Blo05g00647 Blo-Chr5:20941735 1.82E-25 dispersed
Blo02g01135 Blo-Chr2:42740776 Blo03g00240 Blo-Chr3:5210447 2.43E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g94 Blo02g01135 Blo03g00240 Bda06g00135 Bda08g00489 Bpe05g00675 Bpe07g00081 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0260 Cone12ag0266 . . . . . . . . . . . . Bma05g00848 Bma12g00600 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013942 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00240 Blo_Chr03 FPKM 0.0 0.327111 0.536422 1.101732 9.092318 8.79639 7.799888 0.0 0.0 0.0