Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00251 ATGACTCTGAACTTAAGCTGCCCTTGGCTTGTCCGGCTTTCGCTCCCATCGCCGCATATCGTCACTCTGAACAGTTTTGCCTTCTCGCGTTCATTGCATTGTTCCAACTCTGTGGTTTTTGATAGCTTCTCTAGGTCTCTCAAGCTTAATGCTTCTTTGAAAGAGAGCGAAAGTGCGGCTTCGGCTGAGGCTCCAGTTTCAGAGCTTCTGGACGACGATTTGCTTGTCAAGATCTCGGGAGCGCAATATTCTAATGATGTGTTGTCGATGATCGCCAATAAGACTCAGAAAAATGAAGGTGTTGTTAGTGTCTCCGATTGTTGTTTGATTATATCTGCTGCGCTTGAGCGCAATAATCCCGAGCTTGCGCTGTCCGTTTTATACGCAATGCGCTCCAGTGTCGATCAAGCTAGTGTCAATCAAAATGGTCCTCATCTTGGAAGATGGGTATGGTCAAGGCCAGACGTCCATGTCTACACATTGTTAATCCAAGGTCTTGCAGCATCCTTGAGGGTTTCTGATGCTATCAAGATGATTCAGAACATTTGCCGGGTGGGATTATCTCCTGGTGAGGAGGTTCCTTTTGGAAAGGTTGTGCGATGTCCAAGTTGTCTGGTGGCTGTAGCTGTTGCACAACCACAAAATGGTATTCAGATAGTATCTTGTGCACAGTGCCGCTACCAGTATGAACTTATTTCTGGGGACATAATGAGTATTCAGTCTGAAGAAATCAGGATCTGCTCCTGCCGAACGCAGCATGGATGTTCCAGCATGGAAAAGGGGACTCAGATTTTTGAAGTGCAAACCCCATCTGGAGCTGCACGTACACACAGGTTTGCCACAGAAACAGTAGATCTCCCAGCACAACAGGGAGAAAGGGTGACAATTGCTTCGGCATCTCCAGCTAATCTTGCTAGAGGGATTGGTCCTTTTAAATTCAGTCCCAAGGCTCCAAATTTCTACCATGGGGAGCCTCTGTGCTTGACAAACCATAAAGATGGTCGGGAATCACTATTACTGAGAGCCCCAACAAAAGATGGGAACTCGTCCCTACTTAACCCATCCGTCCTTTTTCCGCTTCTAGTGTTGTTAGCTTCTGGAGATGCTGCCTCCGGAGTTATTGATCCCAGCTTGCCTCAGATCCTTACAGTGGCTGCAGTTTCTTCTCTTGCTGCAGGAGCTACTTTTAACACATTTGTTTTACCCCAATTAAATCAGCTTCCTCAAAAAAAAGTTGATGCAGTTGCTATCAAACAGCAACTCTTATCTCAATATGATATGCTTCAATCTCGCATCAAGGACCTAAGGGTTGCTGCGGAAAAGGAGGTTTGGATGGTTGCTAGGATGTGCCAACTGGAGAACAAAATTATTGCTGTTGGTGAACCCTCATATCGTGCTCGGAGAAGTAAAATAAAAAAAGTTCGAGAAGGATTGGAAATTTCCCTCAAGCAACGGATAGAACTCATAGACAGCTATGCAAAAATATCTTCAATGATTGAAATTGAAGTTGAAATGGACTCTAACGTTCTTGCTGCAGAAGCGGCAAGCAGTATGAGTTGGAGGCTTCAAGCGGAAGCCAATGATGAAGCAGAAAGACTTCTTAGCTCTCAACCCATGTCAGAAGAGCAGAACCCTGATGCCCTGGGCGACACACGTGCTGCAATGACTGGGGACAAAGGTCCGATGACGCTGATTCCTAATCTGAAATGGAATGTAAGGACTTCGTCTTCTTCCTCTTTTCGTACCAATCTCTCTTCCTCTATAATGGCTAAGAGCATTCTCGTCACTGGAGGGGCCGGATATATTGGGAGTCATACGGTGCTTCAGCTCCTGCTCGGTGGTTACAGGACCGTCGTTGTCGATAATTTGGATAACTCCTCCGAAATCGCTATTGCCAGAGTTAAGGAGCTCGCCGGTGAATTTGGCAATAATCTCTTTTTTCACCAGGTTGATCTCCGTGACAAGCCAGCGCTGGAAAACGTCTTTGCTTCAGATTCATTTGATGCTGTCATACACTTTGCCGGATTGAAAGCAGTTGGTGAAAGTGTACAGAAACCGTTGCTATATTATAATAACAACTTAATTGGAACAATTACTCTATTGGAAGTCATGGCCGCTCATGGTTGCAAAAAGCTCGTGTTCTCATCATCAGCCACTGTTTATGGTTGGCCGAAGAAGGTTCCATGTACAGAAGAATTCCCCTTGTCTGCCGCGAATCCATATGGCAGAACCAAGCTAATAATTGAAGAAATATGCCGGGATATCTACAGTTCAGACTCTGAATGGAAAATCATATTGTTGAGATACTTCAACCCTGTGGGTGCTCATCCCAGTGGCCATATTGGCGAGGATCCCCGTGGAATCCCAAATAACCTCATGCCCTTTGTGCAGCAAGTCGCGGTTGGCAGGAGACCAGCCCTGACTGTCTTTGGAACCGACTATTCTACGAAGGACGGAACTGGGGTACGTGATTACATTCATGTTGTTGACTTAGCAGATGGACATATTGCAGCATTATCCAAATTGGATGAGCCTGATATAGGCTGTGAAGTTTACAACTTGGGTACCGGACAGGGCACATCCGTTTTGGAGATGGTTGATGCATTTGAGAAGGCATCTGGAAAGAAAATTCCTCTTGTGATGGCTGGCCGTCGAGCTGGTGATGCTGAAATTGTTTATGCATCAACAGAAAAAGCAGAGAGGGACTTGAACTGGAAATCCAGGAGGTCGGATCTTAATCCATCGTTGCTGAATTTCGATCTTGGATTTTTGGAAATGGAGAACTTGATCTCTTTGGTGAATAAAATTCAGAGAGCTTGCACCGCTCTTGGTGATCACGGAGAAGCTAGCGCATTGCCCACACTTTGGGATTCTTTGCCTGCGATTGCCGTTGTCGGTGGTCAGAGCTCAGGCAAGTCTTCAGTATTAGAAAGCATTGTCGGCAAGGATTTCTTACCTCGAGGATCTGGGATTGTTACTCGGCGTCCCCTTGTTTTGCAGCTTCATAAGATTGATGAAGGAAGTAGAGAATATGCTGAGTTCCTTCATCTTCAAAGGAAAAAATTCACTGATTTTGCGGCTGTTAGAAAGGAAATTCAGGATGAGACTGATCGAGAGACTGGCCGGTCTAAACAAATCTCCAGTGTTCCAATCCATCTCAGTATATATTCTCCAAATGTTGTCAACTTAACGCTCATTGATCTTCCTGGTCTCACAAAAGTCGCTGTTGATGGACAATCGGATAACATTGTGATGGACATTGAGAATATGGTTCGCTCCTTTATTGAGAAGCCCAATTGTATTATTCTTGCTATATCACCAGCCAATCAAGATCTTGCCACATCAGATGCTATTAAAATCTCCCGTGAAGTTGATCCTACAGGGGAAAGGACATTTGGTGTTTTGACGAAGATTGATCTCATGGATAAGGGTACTGATGCAGTTGATATATTAGAAGGAAAATCTTATCGGCTAAAATTCCCATGGGTTGGTGTTGTTAACCGCTCACAAGCGGATATTAACAAGAATGTTGATATGATTGCTGCTCGACGTAGAGAGCGGGAATATTTTGCAAATACCCCAGAATACAAGCACCTTTCTCACAGAATGGGTTCTGAGCATCTAGCAAAGATGCTTTCAAAGCATCTAGAAACGGTAATCAAATCCCGTATCCCTGGCATCCAGAACCTTATCAACAAAACCATTGCTGAACTTGAAGCTGAACTGAGCCGTCTTGGAAAGACCGTAGCTACTGATGCCGGAGGGAAACTATATATGATTATGGAGATTTGTCGAATTTTTGATCAGAACTACAAAGAGCATCTTGATGGAGTCCGACCTGGAGGTGATAAAATTTACCACGTCTTTGATAATCAACTTCCTGCTGCTCTCAAAAGGCTGCAGTTTGACAAGCAACTTTCAATGGAAAATATAAAGAAGCTTATAACCGAAGCTGATGGATATCAGCCACATCTAATAGCTCCCGAGCAAGGATACCGTCGCCTTATTGAATCTACTTTAATCACCATAAGAGGTCCTGCTGAGGCAGCTGTTGATGCGGTTCATGCATTGTTGAAGGATTTGGTTCACAAGGCTATCAATGAGACTATAGAGTTAAAGCAGTATCCTGGTCTTAGAACGGAGGTAGGAAACGCAGCCATTGAATCTCTTGACAGAATGAGGGATCAAAGCAAGAAGGCAACCCTCCTACTAGTTGACATGGAATGCAGTTACTTGACAGTCGATTTCTTTCGAAAGCTTCCTCAAGATGTTGAAAAGGGTGGCAACCCCACCCATTCAATCTTTGATAGATACAATGACTCCTATCTGAGACGCATCGGAACAACGGTTTTGTCATACGTAAATATGGTCTGTGCAACCTTACGCAACTCCATTCCGAAGTCCATCGTTTATTGCCAAGTGCGAGAAGCTAAACGAAGCATGCTCGATCATTTCTTCACTGAATTGGGTAAATTGGAGCAAAAGCGACTGTCGTCTCTGTTGAACGAGGACCCAGCAGTGATGGAGCGGCGAACAGCCCTCGCAAAGAGGCTGGAGCTGTACAGGAGTGCGCAATCAGAAATCGATACGGTTGCTTGGTCTAAGTAG 4608 44.77 MTLNLSCPWLVRLSLPSPHIVTLNSFAFSRSLHCSNSVVFDSFSRSLKLNASLKESESAASAEAPVSELLDDDLLVKISGAQYSNDVLSMIANKTQKNEGVVSVSDCCLIISAALERNNPELALSVLYAMRSSVDQASVNQNGPHLGRWVWSRPDVHVYTLLIQGLAASLRVSDAIKMIQNICRVGLSPGEEVPFGKVVRCPSCLVAVAVAQPQNGIQIVSCAQCRYQYELISGDIMSIQSEEIRICSCRTQHGCSSMEKGTQIFEVQTPSGAARTHRFATETVDLPAQQGERVTIASASPANLARGIGPFKFSPKAPNFYHGEPLCLTNHKDGRESLLLRAPTKDGNSSLLNPSVLFPLLVLLASGDAASGVIDPSLPQILTVAAVSSLAAGATFNTFVLPQLNQLPQKKVDAVAIKQQLLSQYDMLQSRIKDLRVAAEKEVWMVARMCQLENKIIAVGEPSYRARRSKIKKVREGLEISLKQRIELIDSYAKISSMIEIEVEMDSNVLAAEAASSMSWRLQAEANDEAERLLSSQPMSEEQNPDALGDTRAAMTGDKGPMTLIPNLKWNVRTSSSSSFRTNLSSSIMAKSILVTGGAGYIGSHTVLQLLLGGYRTVVVDNLDNSSEIAIARVKELAGEFGNNLFFHQVDLRDKPALENVFASDSFDAVIHFAGLKAVGESVQKPLLYYNNNLIGTITLLEVMAAHGCKKLVFSSSATVYGWPKKVPCTEEFPLSAANPYGRTKLIIEEICRDIYSSDSEWKIILLRYFNPVGAHPSGHIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGTDYSTKDGTGVRDYIHVVDLADGHIAALSKLDEPDIGCEVYNLGTGQGTSVLEMVDAFEKASGKKIPLVMAGRRAGDAEIVYASTEKAERDLNWKSRRSDLNPSLLNFDLGFLEMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKIDEGSREYAEFLHLQRKKFTDFAAVRKEIQDETDRETGRSKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDNIVMDIENMVRSFIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAVDILEGKSYRLKFPWVGVVNRSQADINKNVDMIAARRREREYFANTPEYKHLSHRMGSEHLAKMLSKHLETVIKSRIPGIQNLINKTIAELEAELSRLGKTVATDAGGKLYMIMEICRIFDQNYKEHLDGVRPGGDKIYHVFDNQLPAALKRLQFDKQLSMENIKKLITEADGYQPHLIAPEQGYRRLIESTLITIRGPAEAAVDAVHALLKDLVHKAINETIELKQYPGLRTEVGNAAIESLDRMRDQSKKATLLLVDMECSYLTVDFFRKLPQDVEKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCATLRNSIPKSIVYCQVREAKRSMLDHFFTELGKLEQKRLSSLLNEDPAVMERRTALAKRLELYRSAQSEIDTVAWSK 1535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5367150 5385080 + BLOR11432 Blo03g00251 57715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00251 1535 Pfam Dynamin central region 1146 1413 IPR000375 -
Blo03g00251 1535 Gene3D - 593 862 - -
Blo03g00251 1535 SMART dynamin_3 926 1176 IPR001401 GO:0003924|GO:0005525
Blo03g00251 1535 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 589 909 IPR036291 -
Blo03g00251 1535 Gene3D - 926 1234 IPR027417 -
Blo03g00251 1535 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 985 994 IPR019762 -
Blo03g00251 1535 Coils Coil 418 438 - -
Blo03g00251 1535 TIGRFAM galE: UDP-glucose 4-epimerase GalE 593 913 IPR005886 GO:0003978|GO:0006012
Blo03g00251 1535 PANTHER DYNAMIN 927 1534 IPR022812 -
Blo03g00251 1535 Gene3D - 781 910 - -
Blo03g00251 1535 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 956 1225 IPR030381 GO:0005525
Blo03g00251 1535 CDD UDP_G4E_1_SDR_e 593 910 IPR005886 GO:0003978|GO:0006012
Blo03g00251 1535 Pfam Dynamin family 962 1138 IPR045063 -
Blo03g00251 1535 Gene3D Dynamin, middle domain 1256 1511 - -
Blo03g00251 1535 PRINTS Dynamin signature 984 1001 IPR022812 -
Blo03g00251 1535 PRINTS Dynamin signature 959 977 IPR022812 -
Blo03g00251 1535 PRINTS Dynamin signature 1107 1125 IPR022812 -
Blo03g00251 1535 PRINTS Dynamin signature 1126 1142 IPR022812 -
Blo03g00251 1535 PRINTS Dynamin signature 1149 1168 IPR022812 -
Blo03g00251 1535 PRINTS Dynamin signature 1057 1074 IPR022812 -
Blo03g00251 1535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Blo03g00251 1535 CDD DLP_1 958 1225 IPR001401 GO:0003924|GO:0005525
Blo03g00251 1535 Pfam GDP-mannose 4,6 dehydratase 594 908 IPR016040 -
Blo03g00251 1535 Gene3D Tetratricopeptide repeat domain 75 198 IPR011990 GO:0005515
Blo03g00251 1535 Pfam Dynamin GTPase effector domain 1439 1531 IPR003130 GO:0003924|GO:0005525
Blo03g00251 1535 SMART GED_2 1438 1531 IPR003130 GO:0003924|GO:0005525
Blo03g00251 1535 ProSiteProfiles GED domain profile. 1443 1535 IPR020850 -
Blo03g00251 1535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 928 1233 IPR027417 -
Blo03g00251 1535 PANTHER DYNAMIN-LIKE PROTEIN 1E 927 1534 - -
Blo03g00251 1535 MobiDBLite consensus disorder prediction 531 552 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00251 - - - ming:122078669 1160.98
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g01152 Blo03g00251 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00254 Blo-Chr2:2448035 Blo03g00251 Blo-Chr3:5367150 0 dispersed
Blo02g01101 Blo-Chr2:41955403 Blo03g00251 Blo-Chr3:5367150 1.13E-138 dispersed
Blo03g00202 Blo-Chr3:4734304 Blo03g00251 Blo-Chr3:5367150 3.50E-121 dispersed
Blo03g00251 Blo-Chr3:5367150 Blo16g00649 Blo-Chr16:25883702 0 dispersed
Blo04g01300 Blo-Chr4:27604546 Blo03g00251 Blo-Chr3:5367150 2.15E-12 dispersed
Blo08g00242 Blo-Chr8:2975668 Blo03g00251 Blo-Chr3:5367150 5.69E-75 dispersed
Blo03g01548 Blo-Chr3:43123941 Blo03g00251 Blo-Chr3:5367150 7.34E-20 transposed
Blo02g01152 Blo-Chr2:43148301 Blo03g00251 Blo-Chr3:5367150 8.33E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g145 Blo02g01152 Blo03g00251 Bda06g00151 Bda08g00463 Bpe05g00696 Bpe07g00067 . . . . Cma02g00928 . Car02g00677 . . Cpe14g00457 . . . . . . . . Cla07g01096 Cam07g1402 Cec07g1259 Cco07g1236 Clacu07g1160 Cmu07g1139 Cre07g1520 . . Cone6ag0856 Cone9ag0858 . . . . . . . . . . Bma05g00878 Bma12g00612 . Cmo02g00937 . . . . . . . . . . . . . . . . . . . . . . Csa04g00666 Chy07g01146 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018168 0 0 2 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00251 Blo_Chr03 FPKM 77.82534 79.4282 558.489929 518.682007 132.169067 149.667542 115.17971 329.304718 356.145569 299.826874