Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00258 ATGGAGTATGGATTTCACATTCACTGTCGAAGCAGAGCAACGAGGTTTCTGTATAACAGGACAGCGCAAAATGGTTCCTCTGAAACGGCGTCTTCTCTGGATTCTCCTGCTCTGGAGGGAAAAGCGGGGGAGATAGAGAGAGAAACTTTTAGAGAGAGAAAGTTTTGTTTTGGTTGGTGCTGGTTTCCTATTGAATTTGGGGACTTAATGATGGCTATGCCGGGAGGTGGTCGGGGTGTTTTTGATGAAGGTCGTGGTGGAAATGATTTGTATATGGAGCTGTGGAAGACTTGTGCTGGTCCTCTTGTAGAGATTCCTAGCCTACATCAAAGGGTATACTACTTTCCGCAAGGTCATATGGAACAATTAGAAGCTGGCACGGATCAGCCTCTGAATCAGACGCCTTCTCAATTTAGGCCTCCCTCAAAGATTCTATGTCGTGTGATGAACATTCAGCTGCTGGCAGAGCAGGAAACAGATGAGGTTTACGCACAAGTAACTTTGATTCCAGATCATAATGACATGACCCAAGCAACCCCAACTCAAGAACTTGTTGCCAAGGACCTTCATGGTTTTGAGTGGCGATTCAAGCATATTTTTAGAGGTCAACCACGGAGGCACTTGCTGACAACTGGGTGGAGTACATTTGTTACTTGTAAAAGATTAATTGCAGGGGATTCTTTTGTATTTTTGAGGTCGAGTCAATTCATTGTGAGCTTGAATAAGTACTTGGAAGCTGTTAACAAGAAGTTTGAAGTTGGTATGAGATTTAAGATGAGGTTTGAGGGCGAGGATTCTCCAGAGAGAAACTTTTCAGGCACTGTAGTTAGAGTTGAAGATCAATCTCGTCTCTGGGCAGATTCGAAATGGCGATCACTGAAAGTTCAATGGGATGAACCTGCATCTATTCCAAGACCTGAGAGGGTTTCAGCTTGGGAGATAGAACCCTTCGGGACTTCGCCAGCCACTAGTGTGCCTCAATCAGTTGTGGTAAAGAACAAAAGACCTCGCCCACCTGCTGAAATCCCAGCTCTAGATTCTACTAATTCAACTGTATCCACTCTTTGGCATTCTGGGTTGAGTCAATCTGATAGAACACAATTGAGCGTGACTGCAGACATCAAAAGAAGCGACAATCTGCCTGTATGGCATCATAAACATTCAGATATTAGCAGTAATAGTAGCAACTCTGGGTCAATGACACAGAATGAGGGGCCTTGGTTAACTTCCTCCCATGCAAGTGGTTTGCAGAATCTCTGTCAGGATGTCAAAGAGGATTGCAGAGGTGTCTCCGGCTGGCCTGATTATGCACGCTATTCTACTTTGCCTTTGTCAAAGCCAGACTATGCCTTTGGGGTTGAGAATAATATGGGTAAAGGGAAGAAAGGTGAGATTGGTTCTAGCTGTCGCTTGTTTGGTTTCGATCTGATCAATAGTTCTGCTAGTGAGAAGCCATCGAAGGAAACTGCGGAAGGAAATGGCAATAAAATTTCATTGGCTGATTCTGACCAAAAATCAGATTTTTCCCAGGCTTCTAAAGAAAGAATTCAAGATTTGTTGCAAGTTTCCATGAAAGAAATGACAAGCAAGCAGAGCTGCTCCACCAACACGAGAAGCCGCACAAAAGTTCAAATGCAGGGAATGGCTGTTGGTCGTGCAGTGGACTTAACCGCATTGGAAGGGTATGATCAGCTCATAGATGAACTCGAGAAAATGTTTGAGATTGAGGGACAGCTTCGCCCGAGAGACAAATGGGAGATTGTTTTTACCGACGACGAAGGGGATATGATGCTCTTGGGAGATGACCCCTGGCAGGAATTCTGTAACATGGTGAGAAGAATATTGATATGTTCAAGCGAGGACATGAAGAAAATGAGAGGCGGAAGGAAATTTCCGATTTCCTCAGTAGACGGCGGAGGGACCGAAACAAGCTTTGATCTGGGGGTGGGTGGGCAGAAACCGGACAGCTGCAGCTCGATCCCGAGCTTGTGCTTTGGTCCCGTTCGGTCTTTTCTCAACCCTATTGAAACTGGATCTGGTTTTCGATGTAGTTGA 2055 45.11 MEYGFHIHCRSRATRFLYNRTAQNGSSETASSLDSPALEGKAGEIERETFRERKFCFGWCWFPIEFGDLMMAMPGGGRGVFDEGRGGNDLYMELWKTCAGPLVEIPSLHQRVYYFPQGHMEQLEAGTDQPLNQTPSQFRPPSKILCRVMNIQLLAEQETDEVYAQVTLIPDHNDMTQATPTQELVAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTCKRLIAGDSFVFLRSSQFIVSLNKYLEAVNKKFEVGMRFKMRFEGEDSPERNFSGTVVRVEDQSRLWADSKWRSLKVQWDEPASIPRPERVSAWEIEPFGTSPATSVPQSVVVKNKRPRPPAEIPALDSTNSTVSTLWHSGLSQSDRTQLSVTADIKRSDNLPVWHHKHSDISSNSSNSGSMTQNEGPWLTSSHASGLQNLCQDVKEDCRGVSGWPDYARYSTLPLSKPDYAFGVENNMGKGKKGEIGSSCRLFGFDLINSSASEKPSKETAEGNGNKISLADSDQKSDFSQASKERIQDLLQVSMKEMTSKQSCSTNTRSRTKVQMQGMAVGRAVDLTALEGYDQLIDELEKMFEIEGQLRPRDKWEIVFTDDEGDMMLLGDDPWQEFCNMVRRILICSSEDMKKMRGGRKFPISSVDGGGTETSFDLGVGGQKPDSCSSIPSLCFGPVRSFLNPIETGSGFRCS 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5469379 5474403 + BLOR11439 Blo03g00258 57722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00258 684 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 232 637 IPR044835 GO:0003677|GO:0006355|GO:0009725
Blo03g00258 684 MobiDBLite consensus disorder prediction 482 510 - -
Blo03g00258 684 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 174 232 IPR044835 GO:0003677|GO:0006355|GO:0009725
Blo03g00258 684 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 85 173 IPR044835 GO:0003677|GO:0006355|GO:0009725
Blo03g00258 684 CDD B3_DNA 182 242 IPR003340 GO:0003677
Blo03g00258 684 SUPERFAMILY DNA-binding pseudobarrel domain 168 269 IPR015300 -
Blo03g00258 684 Pfam Auxin response factor 233 294 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Blo03g00258 684 Gene3D - 533 626 - -
Blo03g00258 684 Gene3D - 152 243 IPR015300 -
Blo03g00258 684 PANTHER AUXIN RESPONSE FACTOR 9 232 637 - -
Blo03g00258 684 PANTHER AUXIN RESPONSE FACTOR 9 85 173 - -
Blo03g00258 684 MobiDBLite consensus disorder prediction 386 410 - -
Blo03g00258 684 SUPERFAMILY CAD & PB1 domains 533 614 - -
Blo03g00258 684 MobiDBLite consensus disorder prediction 482 506 - -
Blo03g00258 684 MobiDBLite consensus disorder prediction 384 410 - -
Blo03g00258 684 Gene3D - 250 322 - -
Blo03g00258 684 ProSiteProfiles PB1 domain profile. 538 619 IPR000270 GO:0005515
Blo03g00258 684 PANTHER AUXIN RESPONSE FACTOR 9 174 232 - -
Blo03g00258 684 Pfam AUX/IAA family 528 622 IPR033389 -
Blo03g00258 684 ProSiteProfiles B3 DNA-binding domain profile. 183 244 IPR003340 GO:0003677
Blo03g00258 684 Pfam B3 DNA binding domain 179 236 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00258 K14486 K14486, ARF; auxin response factor - qsu:112024852 591.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00258 Blo-Chr3:5469379 Blo06g00975 Blo-Chr6:33043786 1.00E-100 dispersed
Blo02g01158 Blo-Chr2:43201649 Blo03g00258 Blo-Chr3:5469379 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g162 . Blo03g00258 Bda06g00159 . . . . . . Cmo16g00585 Cma02g00922 . Car02g00671 Car15g01164 . Cpe14g00449 . . . . . . . . Cla07g01086 Cam07g1412 Cec07g1249 Cco07g1226 Clacu07g1150 Cmu07g1130 Cre07g1510 . . Cone6ag0864 Cone9ag0869 . . Chy09g01305 Cme07g01536 . . . . . . . . . Cmo02g00930 . . Cma16g00533 . . . . Bhi12g00124 . . . . . Lcy12g1556 . . . . . . . . Csa04g00677 Chy07g01133 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000766 2 4 1 1 2 3 5 3 3 3 3 3 5 3 3 5 3 4 5 3 3 3 3 3 3 3 2 5 3 2 94
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12099 PF02309 AUX_IAA 2.10E-05 CL0072 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00258 Blo_Chr03 FPKM 6.986604 7.92966 7.66279 7.661599 8.869856 7.618959 8.132618 10.559177 10.402081 11.691012