Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00259 ATGGCGTCGTCGTCGCTCACTTCCACTCTTGCTACGCCGTCCTCCTCGTCTTTTCCGTTATGCTCCAAAACCAATTCCCTATTTTCACCTTCAATATCTCTCTCTCACTGTCTCAGAGCTAACTATGCGAAATCGAAAGCTGTCGCTTACCTCAAGAGAAGCCGCTCCGATTCGGGGCAGAGAATTTTTGTGAAGGCTCAAACGATGGATTTCTCGGGCTCTTTCTTTGGGGAAGGGTTCGGGTCGGAGGACGAGCCGCCTTCGCCTGCAATTCCTGGCCTTACTGCTATTGAGGATAAGGAGGAGCCATCGTGTCCTCCGGGGCTCAGAAAGTACGAGAGCATGGTTGTTTTACGGCCGGATATGTCGGAAGATGAGCGCCTCTCTCTTACCCAGAAGTACGAGGAGTTGCTCGTTGCTGGGGGAGGCATGTATGTGGAGGTTTTCAACAGAGGAGTCATCCCTCTTGCCTATGGCATCAAGAAGAAAAACAAAGCTGGAGAATCCAACACATACTTGGACGGTATCTACCTCCTCTTCACCTACTTTACAAAACCCGAATCCCTCGAAATTCTCGAGGAAACTCTGAAAGCAGACGACGACGTTGTTCGATCGATGAGTTTCAAGATTAGAAAACGAAACTTTGGAGTTTCATTAATGGGTCTTCCTCAAACATCAACTCCTCCTCACCTCTACCCTCAAGCATTGCAGCTTAAACTCTACCAGGCCTTCATTTTCTCCATCCCTATTCTCTTCTCCATTATTCTCTTCCTCTTGTTTTACCTCTTCTACCTCAAGAGGAGAGCTTCTTCTCTTTCTTCCTCCGCTCCGGTTCTTCCGATCAGCACCAGTCAAGCCCCGATGGCTCAATACGTCGCTCCGGTGGGTTTGAAAGGGGATATAATAAACGAGCTTCCAAAAGTCATTTTTGACGAGGAAATCAGAGCTAGAGACACCCTATGCTGCGTTTGCTTGGGAGAATTTGAGATGACGGAGGAGTTGGTCCAGGTTCCATCATGCAGGCACGTGTTTCACAAGGAATGCATACATCATTGGCTGCGCTCAAACGCCACTTGTCCGCTGTGTAGATCCCCAGTTCTTCCGGTGCAATTGAAGCCTCCAATCACCACCTGCCACCTGCTCCCTCCGACCACCCATTGA 1161 49.35 MASSSLTSTLATPSSSSFPLCSKTNSLFSPSISLSHCLRANYAKSKAVAYLKRSRSDSGQRIFVKAQTMDFSGSFFGEGFGSEDEPPSPAIPGLTAIEDKEEPSCPPGLRKYESMVVLRPDMSEDERLSLTQKYEELLVAGGGMYVEVFNRGVIPLAYGIKKKNKAGESNTYLDGIYLLFTYFTKPESLEILEETLKADDDVVRSMSFKIRKRNFGVSLMGLPQTSTPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSAPVLPISTSQAPMAQYVAPVGLKGDIINELPKVIFDEEIRARDTLCCVCLGEFEMTEELVQVPSCRHVFHKECIHHWLRSNATCPLCRSPVLPVQLKPPITTCHLLPPTTH 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5474864 5478352 - BLOR11440 Blo03g00259 57723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00259 386 ProSiteProfiles Zinc finger RING-type profile. 321 363 IPR001841 -
Blo03g00259 386 Pfam Ring finger domain 321 363 IPR001841 -
Blo03g00259 386 SMART ring_2 321 362 IPR001841 -
Blo03g00259 386 CDD bS6_chloro_cyano 109 210 - -
Blo03g00259 386 SUPERFAMILY RING/U-box 301 370 - -
Blo03g00259 386 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 24 215 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Blo03g00259 386 PANTHER 30S RIBOSOMAL PROTEIN S6 ALPHA, CHLOROPLASTIC 24 215 - -
Blo03g00259 386 Pfam Ribosomal protein S6 111 209 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Blo03g00259 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 368 IPR013083 -
Blo03g00259 386 Gene3D - 108 215 IPR014717 -
Blo03g00259 386 SUPERFAMILY Ribosomal protein S6 109 213 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Blo03g00259 386 CDD RING-H2_EL5_like 321 363 - -
Blo03g00259 386 Hamap 30S ribosomal protein S6 [rpsF]. 109 212 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00259 K02990 RP-S6, MRPS6, rpsF; small subunit ribosomal protein S6 - zju:107405472 272.707
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g01161 Blo03g00259 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00259 Blo-Chr3:5474864 Blo11g00488 Blo-Chr11:4502163 1.51E-17 dispersed
Blo02g01162 Blo-Chr2:43265588 Blo03g00259 Blo-Chr3:5474864 1.28E-98 transposed
Blo02g01161 Blo-Chr2:43262871 Blo03g00259 Blo-Chr3:5474864 1.18E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g177 Blo02g01161 Blo03g00259 . Bda08g00456 Bpe05g00706 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00928 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012141 0 1 2 1 1 1 2 1 0 1 1 1 1 1 1 2 0 2 2 0 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00259 Blo_Chr03 FPKM 12.789934 14.0769 9.213327 10.550685 9.690897 10.13213 9.995042 9.285762 7.883209 8.170633