Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00261 ATGCCCGAACCGGAGCTCGACGGCGCCGCACCCTTTCCTCTCAAAACGACGGTCGATGATAGGGACCCGCTCTTGGACTTTGATTTCTATATGGGAAGCCAGTGGCCGTTGGATCAGATCTCTCCGATCCTTATCTCTTCCTCCGATCAGCCTTGCTCTCCGCTATGGGCTTTCTCCGACGGGGAAGAAGTTGGGGATGGAAAACTCCATGCCCATCCTCGCTCAGTCCACGGCACAACTAATTTGAATTTGGCGACGCAAAAACCAACCCAGAACATTGAAACAAGTCTGCTCCAACTACCCCCTCAGTGGGGACTTAAATCAATGGTGAATCCAGATGGGTACTGCTTGATCAAAGAGAAAATGACTCAAGCTCTTAGATACTTGAAAGAATTGACCGACCAACAAGTTCTAGCTCAGGTGTGGGCGCCAGTCAAGAGCGGGGGTCGATATGTGTTGACAACTCTCGAGCAACCCTTCGTTCTCGACGCCCAAAGCAATGGACTTCATCAGTATCGAATGGTCTCTCTGATGTACATGTTCTCGGTCAATGGCGAAACTGACGGAGTTCTTGGACTTCCTGGCCGTGTATTCCTGCAGAAATTGCCGGAATGGACTCCAAATGTGCAGTTTTACTCGAGCAAAGAGTATCCGAGGAGAAATCATGCTCTTCACTACAATGTCCAGGGAACTTTGGCTTTGCCGATCTTCGAATCGTCTGGCCAATCCTGTATTGGTGTACTCGAGCTCATTATGAACTCTTCCAAAATCAATTATGCCCCTGAGGTTGACAAAGTCTGTAAAGCTCTTGAGGCTGTCAACTTGAAAAGCTCAGAAATTTTAGATCATCCAATTACAAAGATTTGCAATGAAGGTCGCCAAAATGCGATGGCTGAAATTTTGGAGGTTCTTACAGTTGTATGCGAAGTTCACAAATTACCACTGGCTCAAACCTGGGTTCCTTGCAAGCATGGGAGTGTTCTTGCCAATGGCGGTGGTTTAAAGAAGAGCTGCTCTAGCTTTGATGGCAGTTGTAGGGGACAAGTCTGCATGTCTGCAACTGATATAGCGTCTTATGTTGTCGATGCTCATGTTTGGGGTTTTCGAGAGGCTTGTCTTGAACATCATTTGCAGAAAGGCCAGGGAGTTGCTGGCCGGGCGTTTTTGTCCCAAAGCTCGTGTTTCTCCATGGATATTACCCAGTTCTGCAAGACGGTATACCCTTTAGTGCACTATGCTAGGATGTTCGAGTTAAAGAGCTGTTTTGCAGTCTGCCTCCGGAGCAGTTTTACCGGAGATGATGATTATATTCTTGAGTTTTTCCTCCCGTCTGACGTAAAAGAATATTATGAACAACTGACTTTGTTGGGCTTGTTATTGGCTACGATGAAACAGCATTTTCACACACTCAAGGTTGCATCGGGAATCAAGTTTGAAGAGGGGGAAATTTTCGTAGAAATCATAGAAGCTTCGACTGACGACGGACTAAACTCGAGATTTGAATATATTCGAATACCTCAATCTGTCGAATTGCTACCTGAATCTGATCCTGCTCCCAACGATGGAGAGATATTTGGATTACTGGCAGGTTGTGATGATGATGAAAACAACACTGGTCCGGGGAGTAACCCACCTGTTCCTTCTCCTCCGAAGGATTCGAGAAAGAGATTGGAGAGAAAACGAGGGAAAGCAGAGAAATCGATAAGTTTAGAGGTTCTGCAACAATATTTCACTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGAGTTTGCCCGACAACGATGAAGCGCATCTGTCGGCAGCACGGAATTTCCCGCTGGCCATCTCGGAAGATCAACAAGGTTAATCGATCCCTCTCTAAGCTAAAACGAGTAATTGAATCCGTCCAAGTTGCCGAAGGAGCATTTGGTTTGACTCCTCTCACCACAACCACTAATTCTCCCCCATTTTCCCCCGATGGACCAAATCAGCGTAACTCACCCATCTGTAAGCCGAGTGATCATCAGGGAGAAAATGAAGAATTATCACCAAGAAAAGACCTATCATCTTGGATGGACGAAGGATTCGTTGGAGTGACATCGTGTTTTGATGAATATATTCACGAAAAAAGTGGCCTCGGGCCGAAGATTTGTAAACAATCGAACAAGTCCCAAGCAAAGAGTGGGTCGAGGGAAGAGAGGGGCGGGACTCCTACTTCTCATGGCTCTTGCCAAGGTAGTCCTGCTAATGAAAGCATTCCAGCCAAGGATCCACTTGTTTTCCTCTATAATGAGCAACCCATCACCGGAGTGGATTCCCCCGTCAAACTCAATCCAATGGCTTCATATCCAGTTCATGATCTACTTCCGGCAACAGAAGTCGAAGAACCATTTGGAGCAATGCTTATAGAAGATGCAGGAAGTTCGATAGATTTAAGAAATCTTTGTCCTTCTGCAGCAGATGCCGTTCTGGATGAGCACATTCCAGAATCTTATTGGCTGAATTTTCCCAGTTCAGCTTCTGCACAATTCGTCGATGTTGCAGGTCAAGCAGCAGCTATTGACAAAACAAGGCAAGAAACGAAGAGGATGACGATCAAGGCAACGTACAGGGAAGATATCATAAGATTTCGCATACCCTTGAGCTCTGGCGTAGTGGAGCTAAAAGAAGAAGTGGCTAAGAGGCTGAAACTGGAGGTAGGTACTTTTGACATAAAATATACAGACGATGATCAAGAATGGGTTCTCATAGCCTGTGATGCAGACCTTCAAGAATGTGTCGAGATTTCCAAGTCATCAGGCAGTAGTCTAATCAGACTCTTGATTCATGACATGACCAGCAATCTTGGAAGCTCTTGTGAGAGTACTGGGGAATGA 2856 46.04 MPEPELDGAAPFPLKTTVDDRDPLLDFDFYMGSQWPLDQISPILISSSDQPCSPLWAFSDGEEVGDGKLHAHPRSVHGTTNLNLATQKPTQNIETSLLQLPPQWGLKSMVNPDGYCLIKEKMTQALRYLKELTDQQVLAQVWAPVKSGGRYVLTTLEQPFVLDAQSNGLHQYRMVSLMYMFSVNGETDGVLGLPGRVFLQKLPEWTPNVQFYSSKEYPRRNHALHYNVQGTLALPIFESSGQSCIGVLELIMNSSKINYAPEVDKVCKALEAVNLKSSEILDHPITKICNEGRQNAMAEILEVLTVVCEVHKLPLAQTWVPCKHGSVLANGGGLKKSCSSFDGSCRGQVCMSATDIASYVVDAHVWGFREACLEHHLQKGQGVAGRAFLSQSSCFSMDITQFCKTVYPLVHYARMFELKSCFAVCLRSSFTGDDDYILEFFLPSDVKEYYEQLTLLGLLLATMKQHFHTLKVASGIKFEEGEIFVEIIEASTDDGLNSRFEYIRIPQSVELLPESDPAPNDGEIFGLLAGCDDDENNTGPGSNPPVPSPPKDSRKRLERKRGKAEKSISLEVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQVAEGAFGLTPLTTTTNSPPFSPDGPNQRNSPICKPSDHQGENEELSPRKDLSSWMDEGFVGVTSCFDEYIHEKSGLGPKICKQSNKSQAKSGSREERGGTPTSHGSCQGSPANESIPAKDPLVFLYNEQPITGVDSPVKLNPMASYPVHDLLPATEVEEPFGAMLIEDAGSSIDLRNLCPSAADAVLDEHIPESYWLNFPSSASAQFVDVAGQAAAIDKTRQETKRMTIKATYREDIIRFRIPLSSGVVELKEEVAKRLKLEVGTFDIKYTDDDQEWVLIACDADLQECVEISKSSGSSLIRLLIHDMTSNLGSSCESTGE 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5488587 5492392 + BLOR11442 Blo03g00261 57725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00261 951 Gene3D - 853 937 - -
Blo03g00261 951 ProSiteProfiles RWP-RK domain profile. 547 635 IPR003035 -
Blo03g00261 951 MobiDBLite consensus disorder prediction 526 564 - -
Blo03g00261 951 Pfam RWP-RK domain 567 615 IPR003035 -
Blo03g00261 951 Pfam PB1 domain 857 937 IPR000270 GO:0005515
Blo03g00261 951 CDD PB1_NLP 857 937 IPR034891 -
Blo03g00261 951 ProSiteProfiles PB1 domain profile. 856 938 IPR000270 GO:0005515
Blo03g00261 951 MobiDBLite consensus disorder prediction 639 681 - -
Blo03g00261 951 SUPERFAMILY CAD & PB1 domains 852 941 - -
Blo03g00261 951 MobiDBLite consensus disorder prediction 639 666 - -
Blo03g00261 951 PANTHER PROTEIN NLP8 43 949 IPR045012 GO:0003700
Blo03g00261 951 MobiDBLite consensus disorder prediction 667 681 - -
Blo03g00261 951 MobiDBLite consensus disorder prediction 710 743 - -
Blo03g00261 951 MobiDBLite consensus disorder prediction 707 743 - -
Blo03g00261 951 SMART PB1_new 856 938 IPR000270 GO:0005515
Blo03g00261 951 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 43 949 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00261 - - - csv:101212500 1166.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g01163 Blo03g00261 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01637 Blo-Chr1:56197879 Blo03g00261 Blo-Chr3:5488587 2.23E-12 dispersed
Blo03g00261 Blo-Chr3:5488587 Blo17g00903 Blo-Chr17:29779574 6.38E-15 dispersed
Blo02g01163 Blo-Chr2:43290674 Blo03g00261 Blo-Chr3:5488587 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g191 Blo02g01163 Blo03g00261 . Bda08g00451 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00891 Bma12g00621 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00684 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo02g01163 BCT 173 958 NLP Transcription Factor Family AT1G64530 51.8 1.4e-211 733.0
Blo03g00261 BCT 173 951 NLP Transcription Factor Family AT1G64530 50.8 4.1e-206 714.9
Blo03g00261 BCT 252 951 NLP Transcription Factor Family AT4G24020 54.5 9.0e-198 687.2
Blo02g01163 BCT 252 958 NLP Transcription Factor Family AT4G24020 53.0 1.0e-196 683.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12100 PF00564 PB1 1.50E-18 CL0072 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00261 Blo_Chr03 FPKM 0.0 0.0 0.169267 0.0 0.0 0.0 0.0 0.0 0.0 0.0