Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00263 ATGCCTGGTTTAGTCTCTGCCAAAACTCCGCCTGAAGCTCCGCCTCTCCTTATCTCCGTCCCCAATACTCCGACTCAGATCCAGAGATCCGACCCTGCTAACAACAAGCCTCCATCACATCTACCCAGAAAACAAGTCTCCCCATCTCCTTCGCGATCCAAGTGGTCGCCGGATCGGAAGAAGAAGCTTCAACCCGGAAGCCCGGTACCCAGTTCTGTACCGTTCGATTCCTCGCTCGACAATCCGGATCTCGGGCCCTTCCTACTCAAGCTCGCCTGTGACACTTTCGCTTCAGGCGAAGGCCCAAACAAGGCCTTAGACTACGCGCTCCGAGCCTCCAAATCCTTCGAGCGATGCGCGATCGATGGAGAGCCGAGCCTCGACTTGGCTATGAGCCTGCACGTTCTTGCAGCCATTTACTGTAGCTTGGGAAGGTTCGAGGAGGCGGTTCCGGTTCTGGAGCAGGCGATTCGAGTCCCAATCGTTTCTCGCGGTCTAGATCATGCTCTGATTGCTTTCTCTGGGTTTATGCAATTGGGAGATACATATTCGATGCTTGGTCAACTTGAGCGCGCCATCGCTTGCTATGAAGATGGACTGAAGATTCAGATCGAGGCGTTGGAAGAGACGGATCCCAGAGTGGGAGAGACTTGCAGGTACTTATCTGAGGCCCATGTTCAGGCAATGCAGTTCGACAGAGCAGAGGAGTTGTGCAAGAAAACACTCGAAATCCATCGTGCCCACGGTGAATCAGCATCCCTCGAAGAGGCATCTGACCGCCGACTCATGGCCCTCGTATGCGAAGCAAAAGGCGAGTTTGAGTCTGCCCTCGAGCACCTTGTACTCGCCAGCATGGCAATGAATTCGAGCGGACAAGACAACGAAGTTGCCTCGATCGATGTCAGCATAGGAAACATTTACATGTCTCTCTGTCGCTATGACGAGGCTGTCTTTTCGTACCAGAAGGCTCTCACTGTCTTCAAAGCATGGAAAGGCGATAACCACCCTTCAGTTGCCTCCGTTTTCATCCGCCTCGCCGGTATATATCACAAAATGGGAAAGCTTCGAGAGTCGAAATCTTATTGCAAAAATGCTCTGAGGATTTATTCGAAGCCAGTGCCTGGAACTACGTCGGAAGAAATCGCCGCTGGGTTGACTGAAATATCGGCTATCTATGAATCTGTCGATGAGCCCAATGAGGCTCTGAAGCTTTTGCAGAAGGCAATGAAGCTGTTAGAGGATAAACCAGGACAGCAAAGCACGATTGCCGGGATTGAAGCTCGAATGGGGGTGATGTTCTACATGGTTGGGCGGTATGAAGAGGCAAGAAACTCTTTTGAGAGCGCCATAGCAAAACTGAGAGCCAGTGGGGAGAGAAAATCTGCCTTCTTTGGGGTTGTACTGAACCATATGGGATTGGCTTCTGTTCAACTGTTCAAGATAGATGAGGCTGTTGAGCTTTTTGAAGAAGCAAGAGGAACACTAGAAGTCGAATGCGGCACCTTTCACCATGATACCGTCGGAGTTTACAACAATCTCGCAGCCACCTATGATGCCATGGGCAGAGTGGAGGATGCGATTGAAATATTGGAGCATGTTCTTAAACTGAGAGAAGAGAAGCTCGGAATTGCAAATCCTGATTTCGAGCGCGAGAAGAGGAGATTAGGGGAGCTCCTGAAAGAAGCTGGTAGAACGAGAAACAGAAAAGCGAAATCCCTCGAACTCCTCATCGATCCGAACTCGAAGAAGACGAAGAAAGAGGCAACGAAGAAGTGGGCAGGCTTAGGATTTCGATTCTGA 1800 50.67 MPGLVSAKTPPEAPPLLISVPNTPTQIQRSDPANNKPPSHLPRKQVSPSPSRSKWSPDRKKKLQPGSPVPSSVPFDSSLDNPDLGPFLLKLACDTFASGEGPNKALDYALRASKSFERCAIDGEPSLDLAMSLHVLAAIYCSLGRFEEAVPVLEQAIRVPIVSRGLDHALIAFSGFMQLGDTYSMLGQLERAIACYEDGLKIQIEALEETDPRVGETCRYLSEAHVQAMQFDRAEELCKKTLEIHRAHGESASLEEASDRRLMALVCEAKGEFESALEHLVLASMAMNSSGQDNEVASIDVSIGNIYMSLCRYDEAVFSYQKALTVFKAWKGDNHPSVASVFIRLAGIYHKMGKLRESKSYCKNALRIYSKPVPGTTSEEIAAGLTEISAIYESVDEPNEALKLLQKAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARNSFESAIAKLRASGERKSAFFGVVLNHMGLASVQLFKIDEAVELFEEARGTLEVECGTFHHDTVGVYNNLAATYDAMGRVEDAIEILEHVLKLREEKLGIANPDFEREKRRLGELLKEAGRTRNRKAKSLELLIDPNSKKTKKEATKKWAGLGFRF 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5505614 5507936 - BLOR11444 Blo03g00263 57727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00263 599 Pfam MalT-like TPR region 134 290 IPR041617 -
Blo03g00263 599 Gene3D Tetratricopeptide repeat domain 466 576 IPR011990 GO:0005515
Blo03g00263 599 MobiDBLite consensus disorder prediction 19 53 - -
Blo03g00263 599 Pfam Tetratricopeptide repeat 296 370 - -
Blo03g00263 599 Pfam Tetratricopeptide repeat 467 539 - -
Blo03g00263 599 ProSiteProfiles TPR repeat profile. 507 540 IPR019734 GO:0005515
Blo03g00263 599 SUPERFAMILY TPR-like 135 543 IPR011990 GO:0005515
Blo03g00263 599 SMART tpr_5 257 290 IPR019734 GO:0005515
Blo03g00263 599 SMART tpr_5 215 248 IPR019734 GO:0005515
Blo03g00263 599 SMART tpr_5 130 163 IPR019734 GO:0005515
Blo03g00263 599 SMART tpr_5 339 372 IPR019734 GO:0005515
Blo03g00263 599 SMART tpr_5 423 456 IPR019734 GO:0005515
Blo03g00263 599 SMART tpr_5 297 330 IPR019734 GO:0005515
Blo03g00263 599 SMART tpr_5 382 415 IPR019734 GO:0005515
Blo03g00263 599 SMART tpr_5 173 206 IPR019734 GO:0005515
Blo03g00263 599 SMART tpr_5 465 498 IPR019734 GO:0005515
Blo03g00263 599 SMART tpr_5 507 540 IPR019734 GO:0005515
Blo03g00263 599 Gene3D Tetratricopeptide repeat domain 80 281 IPR011990 GO:0005515
Blo03g00263 599 PANTHER - 1 598 - -
Blo03g00263 599 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 598 - -
Blo03g00263 599 Gene3D Tetratricopeptide repeat domain 282 465 IPR011990 GO:0005515
Blo03g00263 599 MobiDBLite consensus disorder prediction 1 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00263 - - - csv:101207194 973.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00263 Blo-Chr3:5505614 Blo12g00219 Blo-Chr12:14292852 0 dispersed
Blo15g00084 Blo-Chr15:701227 Blo03g00263 Blo-Chr3:5505614 9.90E-06 dispersed
Blo03g00263 Blo-Chr3:5505614 Blo02g01164 Blo-Chr2:43294558 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g193 . Blo03g00263 . Bda08g00450 Bpe05g00710 . . . . Cmo16g00575 . . . . . Cpe14g00445 . . . . . . . . Cla07g01078 Cam07g1422 Cec07g1234 Cco07g1213 Clacu07g1138 Cmu07g1121 Cre07g1498 . . . . . . . Cme07g01520 . . . . . . Bma05g00892 Bma12g00623 . . . . Cma16g00526 . . . . . . . . . . . . . . . . . . . Csa04g00686 Chy07g01123 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001869 2 3 3 3 2 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 3 2 2 2 2 2 2 3 2 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00263 Blo_Chr03 FPKM 298.380554 314.597687 144.99968 145.725983 115.960411 129.527664 114.992943 114.365379 109.174065 110.380791