Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Blo03g00266 | ATGAAAACCACATCAATGGTGCAGGTTCGTGCTCTTCAACGCTTGGGAAGCCAATTTGAGAATGTAAATGGACATGAAAGATCATGCACTTTAGCTGGTCAACATAGATCTGGTCTTTGTACATGTCGTACTAATAATGGGAATGCCAATTCAAACGACAATACAAGTGCCAGGGCAAGCATATCCAGAATTGTCCTGTTGGCTGAAGCATTATTTGAGGTTCTGGATGAAATTCACCTGCAATCTGTGGTTCTTTCTTCCCGGCCTTCTGCATCTTTAATTGGATCTATTCCTGCACCTAATGAAATTGTGGATTCTTTACCTGTCAAATCATACTCGAAGTTGCAAAAACATCACAACGAGGAGGTTGCTCTGTGTTATATATGCCTCGTGGAGTATGAGGAAGGAGATAGAATGAGAATCCTTCCTTGCCATCACGAATTTCATAAAACATGCGTAGACAAGTGGCTGAGGGAGATTCAAAGGAAAATTGAAATGTTTCCTTTTCTTGTTGTTGAATCTGGACCTCTAGAAGGCCAGATTTGTGAAGAACCTTATAAGGAAGGAATGGTCATCTTGCATGCGTATGAATATGATGGAATTGACGGAAACTCTGAGATGGCTAATGAAAGCCTGAACACATGA | 645 | 40.93 | MKTTSMVQVRALQRLGSQFENVNGHERSCTLAGQHRSGLCTCRTNNGNANSNDNTSARASISRIVLLAEALFEVLDEIHLQSVVLSSRPSASLIGSIPAPNEIVDSLPVKSYSKLQKHHNEEVALCYICLVEYEEGDRMRILPCHHEFHKTCVDKWLREIQRKIEMFPFLVVESGPLEGQICEEPYKEGMVILHAYEYDGIDGNSEMANESLNT | 214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 5551243 | 5554403 | + | BLOR11447 | Blo03g00266 | 57730 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Blo03g00266 | 214 | SUPERFAMILY | RING/U-box | 103 | 159 | - | - | |
| Blo03g00266 | 214 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 8 | 163 | - | - | |
| Blo03g00266 | 214 | Pfam | Ring finger domain | 126 | 159 | IPR001841 | - | |
| Blo03g00266 | 214 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 164 | IPR013083 | - | |
| Blo03g00266 | 214 | ProSiteProfiles | Zinc finger RING-type profile. | 126 | 168 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Blo03g00266 | Blo-Chr3:5551243 | Blo16g00653 | Blo-Chr16:25950065 | 4.18E-10 | dispersed | |
| Blo02g01173 | Blo-Chr2:43410797 | Blo03g00266 | Blo-Chr3:5551243 | 6.24E-79 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Blo03g00266 | - | - | pvy:116143582 | 260.766 |