Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00275 ATGGAAGGAATTCCCCACCCTATACCTCGAACTGTGGAGGAGGTCTTCTGTGACTTCAAAGGCAGACGTTCTGGCTTGATCAAAGCTCTTACCATTGATGTTGAGAAATTCTTTCAGCAATGCGATCCTGAGAAGGAAAACTTATGTCTATATGGACTTCCAAATGAGACGTGGGAAGTTAATCTGCCAGTGGAGGAGGTTCCCCCTGAGCTTCCTGAGCCAGCATTAGGCATAAACTTTGCTAGGGATGGTATGCAGGAGAAGGATTGGCTATCATTGGTGGCTGTTCACAGTGATTCATGGTTGCTTGCTGTTGCATTTTATTTTGGTGCACGCTTTGGTTTTGGTAAGAATGAAAGGAAGAAACTTTTCCAGATGATAAATGATCTACCAACCATATTTGAAGTTGTGACAGGAAGTGCTAAGCATCCAAAGGAGCAGTCGGCAACTCATAATAACAGCAGCAAAAGCAAACCGAGCTCGAAGATTCAATCTCGGCCATCTGAGCCACAGAGCAAGGGAGTGAAGATGTCTCCACCACCCAAAGAAGATGAAGACAGTGGGGAGGAAGAAGATGATGACGAGCAAGGTGCAACATGTGGGGCGTGTGGGGATAACTACGGGAATGATGAGTTTTGGATTTGTTGTGATGTTTGTGAAAGATGGTTCCATGGGAAATGTGTTAAGATTACACCTGCAAAGGCAGAGCATATCAAGCAGTACAAGTGCCCAAGTTGCAGTAACAAGAGGGCTAGAGTCTGA 762 45.28 MEGIPHPIPRTVEEVFCDFKGRRSGLIKALTIDVEKFFQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGSAKHPKEQSATHNNSSKSKPSSKIQSRPSEPQSKGVKMSPPPKEDEDSGEEEDDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5650017 5652937 + BLOR11456 Blo03g00275 57739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00275 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Blo03g00275 253 Pfam PHD-finger 200 249 IPR019787 -
Blo03g00275 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Blo03g00275 253 MobiDBLite consensus disorder prediction 143 172 - -
Blo03g00275 253 MobiDBLite consensus disorder prediction 141 197 - -
Blo03g00275 253 CDD PHD_AL_plant 200 249 IPR044104 -
Blo03g00275 253 PANTHER CPG BINDING PROTEIN 1 250 IPR045104 GO:0006355|GO:0042393
Blo03g00275 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Blo03g00275 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Blo03g00275 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Blo03g00275 253 SMART PHD_3 199 247 IPR001965 -
Blo03g00275 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 250 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo02g01188 Blo03g00275 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01452 Blo-Chr1:53610034 Blo03g00275 Blo-Chr3:5650017 6.98E-80 dispersed
Blo03g00275 Blo-Chr3:5650017 Blo17g00276 Blo-Chr17:2903439 3.29E-111 dispersed
Blo02g01188 Blo-Chr2:43595719 Blo03g00275 Blo-Chr3:5650017 6.36E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12102 PF12165 Alfin 5.50E-68 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00275 - - jre:109018723 435.261