Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00280 ATGGAACTCTCCAATCAAGAAGCTGATATTCCACTTCCAATAAACAGTAGCTATGGCGGGGGACACGGGCATGGGCATGGGCACATGATCCATCATCATGATCATTCCATCAACATTCATTCATCTTCTCCACAAATACCCACCAATAACAATGGACAGTCAGACATACCCACTATCCTAGAAGATCATCAAACCTTAGCAGTAGCAAACTACAAGAGACCATCGTCAACGGTCAAATACAAAGAGTGCTTGAAGAATCATGCAGCTTCAATTGGAGGAAATGCAACAGATGGGTGTGGAGAATTCATGCCTAGTGGAGAAGAAGGGTCCATTGAGGCCCTCACTTGCTCAGCCTGCAACTGCCATAGAAACTTCCATAGAAAAGAAGTTGAAGGAGAGAATGAGTTCCCTCTCCATAGCCAACACCTTAACACCAGTAGGGTAGGAAGAAAATTCATCTTCAACCACCATAAGAACATTATAGCACCAGAAGCCTTAGCCTATTCCACAGCGACGGGCACATTTTTACCCACCAGAACCTTACCAGTTCCCCCTCACCAGATGATAATGTCCTACCAAATGCCTCCTCTTCCTTCGGAATCGGACGAGCAAGAAGGAGCGGGTCGGCCTACTACGCAGAGGGCGAAGAAAAGATTCAGGACGAAATTCAGCCAAGAGCAGAAGGAGAAGATGCTAAACTTCGCAGAAAAAATAGGGTGGAAAATGCAGAAGCAGGAAGAGGGCGTGGTGCAGCAGTTCTGCCAAGAGATTGGAGTGAAGAGGAGGGTGCTCAAAGTATGGATGCACAACAATAAGCATAATCTAGCCACTAAGAACCCATCCTCATCTGGTTGA 855 46.32 MELSNQEADIPLPINSSYGGGHGHGHGHMIHHHDHSINIHSSSPQIPTNNNGQSDIPTILEDHQTLAVANYKRPSSTVKYKECLKNHAASIGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEVEGENEFPLHSQHLNTSRVGRKFIFNHHKNIIAPEALAYSTATGTFLPTRTLPVPPHQMIMSYQMPPLPSESDEQEGAGRPTTQRAKKRFRTKFSQEQKEKMLNFAEKIGWKMQKQEEGVVQQFCQEIGVKRRVLKVWMHNNKHNLATKNPSSSG 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5690317 5691171 + BLOR11461 Blo03g00280 57744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00280 284 Pfam ZF-HD protein dimerisation region 78 130 IPR006456 -
Blo03g00280 284 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 216 272 IPR006455 -
Blo03g00280 284 SUPERFAMILY Homeodomain-like 207 275 IPR009057 -
Blo03g00280 284 Gene3D - 200 278 - -
Blo03g00280 284 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 80 129 IPR006456 -
Blo03g00280 284 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 79 130 IPR006456 -
Blo03g00280 284 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 26 278 - -
Blo03g00280 284 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 26 278 - -
Blo03g00280 284 MobiDBLite consensus disorder prediction 196 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00280 Blo-Chr3:5690317 Blo18g00811 Blo-Chr18:23935729 2.81E-56 dispersed
Blo03g00280 Blo-Chr3:5690317 Blo16g00046 Blo-Chr16:1874806 7.06E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12103 PF04770 ZF-HD_dimer 8.00E-30 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00280 - - qsu:112015870 351.673