Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00280 ATGGAACTCTCCAATCAAGAAGCTGATATTCCACTTCCAATAAACAGTAGCTATGGCGGGGGACACGGGCATGGGCATGGGCACATGATCCATCATCATGATCATTCCATCAACATTCATTCATCTTCTCCACAAATACCCACCAATAACAATGGACAGTCAGACATACCCACTATCCTAGAAGATCATCAAACCTTAGCAGTAGCAAACTACAAGAGACCATCGTCAACGGTCAAATACAAAGAGTGCTTGAAGAATCATGCAGCTTCAATTGGAGGAAATGCAACAGATGGGTGTGGAGAATTCATGCCTAGTGGAGAAGAAGGGTCCATTGAGGCCCTCACTTGCTCAGCCTGCAACTGCCATAGAAACTTCCATAGAAAAGAAGTTGAAGGAGAGAATGAGTTCCCTCTCCATAGCCAACACCTTAACACCAGTAGGGTAGGAAGAAAATTCATCTTCAACCACCATAAGAACATTATAGCACCAGAAGCCTTAGCCTATTCCACAGCGACGGGCACATTTTTACCCACCAGAACCTTACCAGTTCCCCCTCACCAGATGATAATGTCCTACCAAATGCCTCCTCTTCCTTCGGAATCGGACGAGCAAGAAGGAGCGGGTCGGCCTACTACGCAGAGGGCGAAGAAAAGATTCAGGACGAAATTCAGCCAAGAGCAGAAGGAGAAGATGCTAAACTTCGCAGAAAAAATAGGGTGGAAAATGCAGAAGCAGGAAGAGGGCGTGGTGCAGCAGTTCTGCCAAGAGATTGGAGTGAAGAGGAGGGTGCTCAAAGTATGGATGCACAACAATAAGCATAATCTAGCCACTAAGAACCCATCCTCATCTGGTTGA 855 46.32 MELSNQEADIPLPINSSYGGGHGHGHGHMIHHHDHSINIHSSSPQIPTNNNGQSDIPTILEDHQTLAVANYKRPSSTVKYKECLKNHAASIGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEVEGENEFPLHSQHLNTSRVGRKFIFNHHKNIIAPEALAYSTATGTFLPTRTLPVPPHQMIMSYQMPPLPSESDEQEGAGRPTTQRAKKRFRTKFSQEQKEKMLNFAEKIGWKMQKQEEGVVQQFCQEIGVKRRVLKVWMHNNKHNLATKNPSSSG 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5690317 5691171 + BLOR11461 Blo03g00280 57744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00280 284 Pfam ZF-HD protein dimerisation region 78 130 IPR006456 -
Blo03g00280 284 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 216 272 IPR006455 -
Blo03g00280 284 SUPERFAMILY Homeodomain-like 207 275 IPR009057 -
Blo03g00280 284 Gene3D - 200 278 - -
Blo03g00280 284 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 80 129 IPR006456 -
Blo03g00280 284 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 79 130 IPR006456 -
Blo03g00280 284 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 26 278 - -
Blo03g00280 284 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 26 278 - -
Blo03g00280 284 MobiDBLite consensus disorder prediction 196 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00280 - - - qsu:112015870 351.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00280 Blo-Chr3:5690317 Blo18g00811 Blo-Chr18:23935729 2.81E-56 dispersed
Blo03g00280 Blo-Chr3:5690317 Blo16g00046 Blo-Chr16:1874806 7.06E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1234 . Blo03g00280 Bda06g00184 . . . . . . . . . . . . . . . . . . . . . Cla11g00012 Cam11g0009 Cec11g0010 Cco11g0011 Clacu11g0158 Cmu11g0008 Cre11g0510 . . . . . . . . . . . . . . . Bma12g00035 . . . . . . . Cpe01g01712 . . . . . . . . . . . . . . . . . . Cme10g01673
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo05g00749 . 111 289 ZF-HD Transcription Factor Family AT5G65410 51.1 9.3e-40 161.0
Blo18g00811 BCT 92 285 ZF-HD Transcription Factor Family AT4G24660 50.5 4.3e-43 171.8
Blo17g00796 BCT 91 285 ZF-HD Transcription Factor Family AT4G24660 50.3 2.2e-42 169.5
Blo06g00064 . 40 216 ZF-HD Transcription Factor Family AT4G24660 50.8 2.9e-39 159.1
Blo03g00280 . 66 279 ZF-HD Transcription Factor Family AT2G02540 51.4 6.9e-52 201.4
Blo04g00916 BCT 121 309 ZF-HD Transcription Factor Family AT2G02540 50.2 4.8e-37 152.1
Blo04g00916 BCT 112 309 ZF-HD Transcription Factor Family AT1G75240 53.8 3.3e-38 156.0
Blo10g00133 BCT 12 252 ZF-HD Transcription Factor Family AT5G15210 58.8 7.1e-53 204.5
Blo17g00363 . 11 248 ZF-HD Transcription Factor Family AT5G15210 56.3 8.1e-49 191.0
Blo10g00133 BCT 1 261 ZF-HD Transcription Factor Family AT3G28920 57.3 9.9e-59 224.2
Blo17g00363 . 16 279 ZF-HD Transcription Factor Family AT3G28920 56.3 3.0e-55 212.6
Blo11g00585 BCT 9 247 ZF-HD Transcription Factor Family AT3G28920 52.8 5.8e-51 198.4
Blo10g00133 BCT 15 261 ZF-HD Transcription Factor Family AT5G39760 52.3 4.3e-52 202.2
Blo17g00363 . 24 271 ZF-HD Transcription Factor Family AT5G39760 54.6 2.2e-48 189.9
Blo11g00585 BCT 58 247 ZF-HD Transcription Factor Family AT1G69600 52.5 2.1e-48 189.5
Blo03g00280 . 66 279 ZF-HD Transcription Factor Family AT2G02540 51.4 6.9e-52 201.4
Blo04g00916 BCT 121 309 ZF-HD Transcription Factor Family AT2G02540 50.2 4.8e-37 152.1
Blo18g00811 BCT 92 285 ZF-HD Transcription Factor Family AT4G24660 50.5 4.3e-43 171.8
Blo17g00796 BCT 91 285 ZF-HD Transcription Factor Family AT4G24660 50.3 2.2e-42 169.5
Blo06g00064 . 40 216 ZF-HD Transcription Factor Family AT4G24660 50.8 2.9e-39 159.1
Blo10g00133 BCT 15 261 ZF-HD Transcription Factor Family AT5G39760 52.3 4.3e-52 202.2
Blo17g00363 . 24 271 ZF-HD Transcription Factor Family AT5G39760 54.6 2.2e-48 189.9
Blo05g00749 . 111 289 ZF-HD Transcription Factor Family AT5G65410 51.1 9.3e-40 161.0
Blo11g00585 BCT 58 247 ZF-HD Transcription Factor Family AT1G69600 52.5 2.1e-48 189.5
Blo10g00133 BCT 12 252 ZF-HD Transcription Factor Family AT5G15210 58.8 7.1e-53 204.5
Blo17g00363 . 11 248 ZF-HD Transcription Factor Family AT5G15210 56.3 8.1e-49 191.0
Blo04g00916 BCT 112 309 ZF-HD Transcription Factor Family AT1G75240 53.8 3.3e-38 156.0
Blo10g00133 BCT 1 261 ZF-HD Transcription Factor Family AT3G28920 57.3 9.9e-59 224.2
Blo17g00363 . 16 279 ZF-HD Transcription Factor Family AT3G28920 56.3 3.0e-55 212.6
Blo11g00585 BCT 9 247 ZF-HD Transcription Factor Family AT3G28920 52.8 5.8e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12103 PF04770 ZF-HD_dimer 8.00E-30 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00280 Blo_Chr03 FPKM 24.17383 25.138748 6.703939 7.111405 10.740566 10.197788 11.940463 3.846142 3.444885 4.015566