Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00284 ATGGCGCAGGCGATTCAGAATGATGTTGAAATCGAGGGTTTTGAGAGGGGTGGCTCTGAAGTGTCAGAGGATAGAGACTCTGTCGTTGTGACGATGAATGAACCTCTGTTGCTTCGTAAAAGTAGCAGGATCAACAAAACCTCTCAGCTCGCCATTGTTGGCGCCAATGTCTGCCCCATTGAAAGCCTCGACTACGAGATCGCAGAGAATGATCTTTTCAAGCAGGACTGGAGATCCAGAACAAAGACAGAGATATTTCAATATGTTGTCCTCAAATGGACGCTTGCCCTTCTTATTGGTGTCAGCACAGGACTTGTTGGCTTCTTCAATAATCTTGCTGTCGAAAATATAGCTGGGTTCAAACTACTGCTTACTAACAACTTCATGGTTCAGAACAAGTTTTATCATGCATTTGCAGCACTTGCTAGTTGCAACATGGTTTTGGCTGTTGCTGCATCTGCACTATGTGCCTACATTGCTCCTGCAGCTGCAGGCTCTGGCATACCAGAAGTGAAAGCGTACCTCAATGGGATAGATGCTCATTCCATGTTGGCCCCGACTACCCTCTTTGTAAAGATCTTTAGTTCCATTTTAGGTGTTGCTGCTGGATTCGTTGTTGGTAAGGAAGGACCTATGGTACATACTGGTGCATGCATAGCCTCTTTACTTGGACAAGGAGGCTCTAGAAAATACCACTTAACTTGGAAGTGGCTCAGATACTTCAAAAATGATAGGGATAGGCGGGATTTGATCACCTGTGGTGCTGCTGCTGGAGTAGCAGCTGCCTTCCGTGCCCCAGTGGAGGAGTGCTCTTCTTTGGAGAACCTTCTTTACAACTGCCGTAAAGAAGTGGTGTACAGCACCCCAGATTTACTGGCTGTGTTATTACTAGGAGTTCTCGGTGGTGTCTTTGGAAGCCTTTACAATTATTTTGTTGACAAGGTTCTCCGCACTTACAGCATCATCAATGAGAGAGGTCCTTCTGTTAAAATCCTACTTGTTGTTGCCATTTCTCTTTTGACTTCTTGCTGCTCTTACTGTCTTCCATGGCTCTCTATCTGCATACCTTGCCCTGCTCACTTGGAGGATCAGTGTCCCACCATAGGTCGCACTGGTAATTACAAGAGCTTTCAATGCCCTCCTAACCATTACAATGATCTTGCTTCGCTTTTCCTCAATACCAACGATGACGCAATTCGCAACCTGCTGAGCTCTGCTTCTGATAAGGAATTTCACCTCTCAACCCTAGCAATTTTCTTTGCTGGCATCTACTTTCTTGGCATTATCACTTATGGAATTGCTATTCCCTCTGGCCTCTTCATTCCCGTCATACTTGCTGGGTCATCTTATGGGCGCCTTGTTGGGACACTCGTTGGCTCTCTATCCAATCTTGATGTGGGTCTATTTGCTCTCCTCGGAGCTGCATCTTTTCTTGGTGGCACCATGAGAATGACTGTTTCTCTATGTGTCATCCTTCTTGAACTTACTAATGATCTTTTGATGCTACCATTGGTGATGCTTGTTCTTCTAATTTCAAAAACTGTAGGCGATTGTTTTAACAAAGGTGTCTATGACCAAATTGTCAAAATGAAGGGGTTGCCATACATGGAAGCCCATGCAGAGCCCTATATGAGACACTTGGTTGCCAGTGATGTCGTGTCTGGTCCGCTAATTACACTTTCTGGAGTAGAAAAAGTTGGAACCATAATGCATGCTTTGAAGATAACAAAACATAATGGATTCCCTGTTATCGATGAGCCCCCAATATCGGATGCTTCGGAATTGTGTGGGCTTGTTCTCAGGTCTCATCTTCTTGTTTTGCTCAAAGGGAAGAATTTCACGAAGTATAAAGGGACTACTGGATCAGCAATAACGAGGAGATTTACAGCACATGATTTTGCAAAAGCAGGATCGGGTAAAGGGGTGAAGATGGGGGACTTGGATATCAAAGAGGATGAGATGGAGATGTATGTAGATCTCCATCCTATTACAAATACATCCCCTTATACCGTATTGGAAACAGTGTCTCTTGCTAAAGCAGCTATTCTCTTTCGCGACCTCGGCTTACGTCACTTATTGGTGGTGCCAAAGAAACAAGGGAAAGTACTGAAGGTCTGGAAACAGATAGCTAGCTTGAAGGTTGGTACCAATGGAAGTGGTGTTGGAGCTACTGCAAATCGTCTCAATTTCCTGACCCAATTCCCGCCTTATTCTAAAACAAGGGTCAACTCCCTCCGTAACATCCTTATTGAATTGAAGAAAGACTTCATATGTGCTGCCATACACTCGTATCCTGTCGGAAACCCAAATAAAACCTCATTTGCCGCTGACAACTCCATAGCCGCTATCACCGAAATCGTCGGTTCCTTAAGCGGAGCTTGCATCTTCTTAAAAACTTCCTCTGGCAACAACTTTTCTTATGGCGCTGCTAGTTTACCTGGTAAGCTTGGAACTTCCTCCTGTTTGATTCTCATCCCTTTGCTCACTTTGGGTTCAAATTCTTGTTCCTCGGCCTTGTGCTCACCCATACTGATAGCAATATAG 2544 44.61 MAQAIQNDVEIEGFERGGSEVSEDRDSVVVTMNEPLLLRKSSRINKTSQLAIVGANVCPIESLDYEIAENDLFKQDWRSRTKTEIFQYVVLKWTLALLIGVSTGLVGFFNNLAVENIAGFKLLLTNNFMVQNKFYHAFAALASCNMVLAVAASALCAYIAPAAAGSGIPEVKAYLNGIDAHSMLAPTTLFVKIFSSILGVAAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVEECSSLENLLYNCRKEVVYSTPDLLAVLLLGVLGGVFGSLYNYFVDKVLRTYSIINERGPSVKILLVVAISLLTSCCSYCLPWLSICIPCPAHLEDQCPTIGRTGNYKSFQCPPNHYNDLASLFLNTNDDAIRNLLSSASDKEFHLSTLAIFFAGIYFLGIITYGIAIPSGLFIPVILAGSSYGRLVGTLVGSLSNLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLMLPLVMLVLLISKTVGDCFNKGVYDQIVKMKGLPYMEAHAEPYMRHLVASDVVSGPLITLSGVEKVGTIMHALKITKHNGFPVIDEPPISDASELCGLVLRSHLLVLLKGKNFTKYKGTTGSAITRRFTAHDFAKAGSGKGVKMGDLDIKEDEMEMYVDLHPITNTSPYTVLETVSLAKAAILFRDLGLRHLLVVPKKQGKVLKVWKQIASLKVGTNGSGVGATANRLNFLTQFPPYSKTRVNSLRNILIELKKDFICAAIHSYPVGNPNKTSFAADNSIAAITEIVGSLSGACIFLKTSSGNNFSYGAASLPGKLGTSSCLILIPLLTLGSNSCSSALCSPILIAI 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5732060 5738336 - BLOR11465 Blo03g00284 57748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00284 847 Gene3D Clc chloride channel 270 537 - -
Blo03g00284 847 SUPERFAMILY Clc chloride channel 70 538 IPR014743 -
Blo03g00284 847 SMART cbs_1 667 713 IPR000644 -
Blo03g00284 847 SMART cbs_1 556 609 IPR000644 -
Blo03g00284 847 Gene3D Clc chloride channel 84 269 - -
Blo03g00284 847 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 5 269 - -
Blo03g00284 847 SUPERFAMILY CBS-domain pair 540 702 IPR046342 -
Blo03g00284 847 PRINTS Chloride channel signature 485 504 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo03g00284 847 PRINTS Chloride channel signature 256 275 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo03g00284 847 PRINTS Chloride channel signature 467 483 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo03g00284 847 PRINTS Chloride channel signature 523 537 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo03g00284 847 PRINTS Chloride channel signature 161 178 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo03g00284 847 PRINTS Chloride channel signature 192 211 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo03g00284 847 PRINTS Chloride channel signature 435 455 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo03g00284 847 Pfam Voltage gated chloride channel 276 516 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo03g00284 847 Pfam Voltage gated chloride channel 149 267 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo03g00284 847 PANTHER CHLORIDE CHANNEL PROTEIN 285 702 - -
Blo03g00284 847 PANTHER CHLORIDE CHANNEL PROTEIN 5 269 - -
Blo03g00284 847 CDD CBS_pair_voltage-gated_CLC_euk_bac 549 703 - -
Blo03g00284 847 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 285 702 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00284 Blo-Chr3:5732060 Blo16g00894 Blo-Chr16:36620751 0 dispersed
Blo08g00572 Blo-Chr8:19349554 Blo03g00284 Blo-Chr3:5732060 3.62E-32 transposed
Blo02g01193 Blo-Chr2:43656855 Blo03g00284 Blo-Chr3:5732060 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00284 K05016 - jre:108988922 1056.97