Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00296 ATGGGGAAGGGTCTCTGCTCTTTTCGCCTCACCAACCCCCGTCGTCGCTCTAAAACCAAGCATCACCCTCATCCCTCCCCTCCTTCATCGCTTCCTGGCACCAGTTCCCCGCCGAACAACGGCCTGATTGCTACCGCTGCTGCTGCTGCTGCTGGGGCGGCCGCAGCCAAGGGGAAGAAGAAGGCTGGTGGACCCAGGCTGTGGATGCGTTTTGACCGATGGGGCCGCTCCGAGATGGTAGAGTGCGATAAGAGCGCTATTATCCGGCTTGCTGGGATTCCTGCCCGGGATTTGAGGATTCTTGGTCCTGTTTTCTCTCAATCGTCCAATATTCTTGGCAGAGAGAAGGCCATGGTTGTTAACTTAGAGTTTATAAAGGCAATAGTTACTGCAGAAGAAGTGCTTTTACTTGAGCCCCTTCGTCAGGAGGTTCTTCCATTTGTGGATCAGCTACGACAGCAACTTCCTCAGAAGTGTCCATCTAGGACTCACGGAACTGAAACTTTGGAAGAACAAGAGAATGATGTGCATGTTTTGACCGGTAGGCAATGGTTGCCTGTGTCGGAAACAGCTGAAGCTTTGAACAGTGAGCTCCCATTTGAGTTTCAGGTTCTGGAAATTGCATTAGAGGTTGTTTGTTCATACTTAGACTTGAGGGTGGCAGAGCTTGAGACAGATGCATACCCCGTTCTTGATGAACTGGCAAGGAATGTCAGCACCAAAAATCTTGAACACGTGAGAAGTTTAAAAAGCAATCTTACTCGACTACTTGCACGCGTGCAAAAGATCTGCACAAATGAGGATGACAATGGTTGTGATGACACTGGCACTGTTACGGTGAGGGATGAAATCGAACATCTATTGGATGACAATGAAGACATGGCACATTTATATTTAACAAGGAAGTGGATGCAGAATCAACAATCCTTGGCTTCGTCGGGCGGTGTAGCCTGCAATAGTTTATCTGCTCCTTCCTCCCATCTTCGTCGACTTAATTCTACGCGGAGCGGGAGTTTGACGGCTAGCAATCATTTGGAAGATAATGATGTAGAAGATCTTGAGATGTTGCTTGAGGCATATTTTATGCAGTTGGATTTAACGCGCAATAAGATACTATCGGTTCGGGAGTACATAGACGACACGGAGGACTACGTGAACATTCAACTGGACAACCAGCGAAATGAACTTATTCAACTTCAGTTGATACTGACCATCGCATCATTTGCCATAACAATCGAAACTTTGATTTCTGGACTGTTTGGAATGAACATCCCCTGCACCCTCTACAATTCCAATGGGATATTTGGGTACTTTGTGTCAGCAATGACGGCATTCAGTGTATCGATATTCCTGCTTGTTTTAGGATATGCAAGATGGAAGAAGCTACTTGGTTCCTAA 1398 46.92 MGKGLCSFRLTNPRRRSKTKHHPHPSPPSSLPGTSSPPNNGLIATAAAAAAGAAAAKGKKKAGGPRLWMRFDRWGRSEMVECDKSAIIRLAGIPARDLRILGPVFSQSSNILGREKAMVVNLEFIKAIVTAEEVLLLEPLRQEVLPFVDQLRQQLPQKCPSRTHGTETLEEQENDVHVLTGRQWLPVSETAEALNSELPFEFQVLEIALEVVCSYLDLRVAELETDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKICTNEDDNGCDDTGTVTVRDEIEHLLDDNEDMAHLYLTRKWMQNQQSLASSGGVACNSLSAPSSHLRRLNSTRSGSLTASNHLEDNDVEDLEMLLEAYFMQLDLTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLILTIASFAITIETLISGLFGMNIPCTLYNSNGIFGYFVSAMTAFSVSIFLLVLGYARWKKLLGS 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5852341 5854761 - BLOR11477 Blo03g00296 57760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00296 465 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 401 451 IPR045863 -
Blo03g00296 465 MobiDBLite consensus disorder prediction 1 41 - -
Blo03g00296 465 Gene3D - 56 139 - -
Blo03g00296 465 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 7 465 IPR039204 -
Blo03g00296 465 CDD Mrs2_Mfm1p-like 68 462 IPR039204 -
Blo03g00296 465 Gene3D Magnesium transport protein CorA, transmembrane region 140 396 - -
Blo03g00296 465 Pfam CorA-like Mg2+ transporter protein 351 455 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Blo03g00296 465 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 7 465 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00296 K16075 MRS2, MFM1; magnesium transporter - zju:107415174 597.816
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00296 Blo-Chr3:5852341 Blo10g00506 Blo-Chr10:11257200 2.15E-99 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo10g00506 . 1 443 MRS2 Gene Family AT1G16010 82.7 5.3e-199 690.6
Blo16g01085 . 40 420 MRS2 Gene Family AT1G16010 55.9 2.6e-113 406.0
Blo01g00099 . 1 368 MRS2 Gene Family AT5G64560 81.3 5.2e-163 570.9
Blo03g00064 . 40 535 MRS2 Gene Family AT3G19640 62.8 2.9e-150 528.9
Blo03g00296 . 63 465 MRS2 Gene Family AT3G58970 67.2 5.2e-138 488.0
Blo16g01085 . 13 420 MRS2 Gene Family AT2G03620 64.2 7.0e-132 467.6
Blo10g00506 . 13 443 MRS2 Gene Family AT2G03620 52.3 9.8e-110 394.0
Blo01g00099 . 1 330 MRS2 Gene Family AT5G09690 76.2 6.9e-132 467.2
Blo01g00099 . 12 290 MRS2 Gene Family AT5G09720 66.0 9.3e-91 330.5
Blo10g00506 . 1 443 MRS2 Gene Family AT1G80900 83.3 3.1e-199 691.4
Blo16g01085 . 25 420 MRS2 Gene Family AT1G80900 53.3 4.5e-113 405.2
Blo03g01303 . 1 415 MRS2 Gene Family AT5G22830 66.0 1.4e-138 490.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00296 Blo_Chr03 FPKM 13.071718 16.312235 12.409307 12.427395 7.091615 7.59738 7.483818 16.787132 15.437613 16.148561