Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00336 ATGGGAAACCGGGTAGACCGAGCCCCACCCGATTTCCCAGCTAAAATTGAGGTAGGGCTTCCGAGTTCCGCCTTCCTGTCCCCGAGCCCCGACGAAGAGAAGAGATTGCTTGGCCAGTTCACCTTCGCCCTTCGCTGCGTCAACCAGATCTCGAGTGCCGAGTGGAGTCGTTGTCTCCCACTACCAGATCTCGAGTGCCGAGTGGAGTCCTTGCCATTTCAGATCTTTCCCATCGGCGAGCCGGCGACTGCGAGACGCCATTCTTCACGGCCCGAGGAGATAGCCATGGTCTCTCCCATCCCTCTTTTCCTCGTTTCGGCTCTCTCGTTCTTTGCTTCCCCTTGGTCTTCTACTTCACCAATAACACTCTCGACCTCTTACCTCAACCTCGCTTCTTCGATCAAGAACATCAGATCTGTGTACAAATTTACAGAAACCGATTCGACCGTTGGTGTTCTTCCGTTGTTTCACGTACACGGACTAATGGCCGGTTTACTCAGCTCACTCTCCGCCGGAGCCGCCGTGACTCTCCCGGCGACGGGGAGATTCTCAGCTTCAACGTTTTGGAAAGACATGATTGATTGCAAAGCCACGTGGTACACCGCCGTTCCAACCATTCACCAAATTTTACTAGATCGCCACCTCCACAAGCCAGAAACCGTGGCGATTTTGGACGACAATGGCGTGCCGCAGCAGGTCGGCGCGAGCGGAGAGGTGTGTGTGAGAGGACCGAACGTGACAAGGGGTTACAAAAATAATCCCGAGGCTAATCGGACGGCGTTCAAATTCGGATGGTTCCACACCGGCGACATTGGATACTTCGATTCCGACGGCTATTTGCATCTCGTTGGCCGGATTAAGGAGCTCATCAACCGTGGAGGGGAGAAGATTTCGCCCATTGAAGTCACGATTAACTGTGCTGTAATCCCAAGAGACGGCTGCAAATTGGAAGAGGCAGAGGTGCTGCAACTTTGCAAGAAGAACCTCCAAAGAAGATATGCAGGGCAGACTCCCTGCGGAACAACGGCTTCCGGGAAGATCCAACGGCGGATAGTTGCAGAGCATTTCCTGGCTCAAATCTCGACAGCGAAAGTTCCAAAGTTCGGAGCTTAA 1113 53.55 MGNRVDRAPPDFPAKIEVGLPSSAFLSPSPDEEKRLLGQFTFALRCVNQISSAEWSRCLPLPDLECRVESLPFQIFPIGEPATARRHSSRPEEIAMVSPIPLFLVSALSFFASPWSSTSPITLSTSYLNLASSIKNIRSVYKFTETDSTVGVLPLFHVHGLMAGLLSSLSAGAAVTLPATGRFSASTFWKDMIDCKATWYTAVPTIHQILLDRHLHKPETVAILDDNGVPQQVGASGEVCVRGPNVTRGYKNNPEANRTAFKFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVTINCAVIPRDGCKLEEAEVLQLCKKNLQRRYAGQTPCGTTASGKIQRRIVAEHFLAQISTAKVPKFGA 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7137070 7140099 - BLOR11517 Blo03g00336 57800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00336 370 Pfam AMP-binding enzyme 220 292 IPR000873 -
Blo03g00336 370 Pfam AMP-binding enzyme 127 214 IPR000873 -
Blo03g00336 370 PANTHER ACYL-COA SYNTHETASE 119 220 - -
Blo03g00336 370 PANTHER ACYL-COA SYNTHETASE 304 370 - -
Blo03g00336 370 PANTHER OXALATE--COA LIGASE-LIKE 221 303 - -
Blo03g00336 370 SUPERFAMILY Acetyl-CoA synthetase-like 126 359 - -
Blo03g00336 370 Gene3D - 218 294 IPR042099 -
Blo03g00336 370 Gene3D - 116 217 IPR042099 -
Blo03g00336 370 PANTHER ACYL-COA SYNTHETASE 221 303 - -
Blo03g00336 370 PANTHER OXALATE--COA LIGASE-LIKE 119 220 - -
Blo03g00336 370 PANTHER OXALATE--COA LIGASE-LIKE 304 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00336 K22133 AAE3; oxalate---CoA ligase [EC:6.2.1.8] - sspl:121778277 303.523
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00307 Blo-Chr3:6177496 Blo03g00336 Blo-Chr3:7137070 8.27E-55 dispersed
Blo03g00336 Blo-Chr3:7137070 Blo19g00322 Blo-Chr19:20983235 7.84E-50 dispersed
Blo03g00336 Blo-Chr3:7137070 Blo03g00359 Blo-Chr3:8066656 1.23E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g336 . . . . . . . Bma14g00071 . . Cma02g01464 . Car02g01229 . . . Cpe05g00325 . . . . . . . . . . . . . . . . . Cone9ag0773 . Csa05g00293 Chy09g01213 . Blo03g00336 . . . . . . . . Cmo02g01499 . . . . . . . Bhi12g00238 . . Lac11g2107 Hepe06g1557 . Lcy12g1663 Cla01g00275 Cam01g0285 Cec01g0278 Cco01g0291 Clacu01g0284 Cmu01g0271 Cre09g2237 Lsi09g00272 . . Cme09g01750
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024833 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00336 Blo_Chr03 FPKM 0.0 0.0 0.0 0.381973 0.0 0.0 0.0 0.0 0.0 0.0