Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00340 ATGGCGTTCGCTACCACTTTTCTTCCAATTCCTCCCTTTCTCTGCCCGCACCACCACCTTCTCTCTTTAAAACCTCGGCTTCACTTCCAATTACGTCCTTCTACTCTCACTCTTCGTGCTCCGCCTCTTTCTGCCATTGGACCCGACGGTAAGTTCTACCCCGACCCCTCCGAGGACGAACCACCTGAAGCTCCCGAGGATTCTGCTCATGGAGTTTCCAAATACCAACAGATTTACCGTCAGGCAGCTCGAGCTCGAAAGCTTGAGGAGGAGGATTTCAAGAAGCATCAGTCGACATACCTCGCTGCCATTGCCGACGTCGAAGACGCACCTGACAATCCGGAATCTCTGGATTCCGCAACTTACAGCGACGATATTTTCGGTGAGATTGACAAAGCTATTTCTATGAAGCGCAAGGAATTCGTCAAGCAGGGGCTACTCAAGCCTAATCCAAAGAAAGAACAAGTAGACGTGGAAGATGTTGTCGAGGGAATTGAAGAGTTGGAGCCTGAAGAGGTCGTTGATTTAGAGGAGATTAACGAGCTTCAGGGACTTACAATGATTTCTGAGGATGAGGAAGAGGAGGAAGATGAACCTGAGAATTTCGATGAAAGAGATAGCGAATTGCAAAATAAGAGACGAAGTTCGTCGTTAAGCCCCTCCTTTGATTTAGATTTCGATAGCTATGGAAAAGCAATGGCTAGAATTGTGGAGCCGAAGTTCAAAATGACTTTAGCTGAGCTTTTGGACGAGAGCAAGGTGGTTCCAGTATCGGTTTTTGGAAATCTAGAGGTGGAAATCACTGGAATTCAACATGATTCTAGGGTGGTTAGCTCGGGTGACTTGTTTGTTTGTTGTGTTGGGAGGAATACTGATGGCCATTTGTTTTTGACTGAGGCTGATAAGAGAGGGGCGGTTGCCGTGGTAGCTAGTAAAGAGATAGATATAGAACAAACTTTAGGATGTAAAGCTTTGGTGATTGTGGAAGATACTGATACCGTTCTTCAGGCATTGGCTGCATCTTTTTACAGGTATCCGTCAAAGAACATGGCTGTGATTGGAATTACAGGGACTAGTGGAAAGACGACGACTGCATTTTTGGTCAAAGGAATGTATGAAGCAATGGGATTAAGAACTGGAATGTTGAGTACAGTGGACAGCTATGTTCACGGCGAAAACAAGTTGGAGTCGCCAAATACAACACCTGATGCTGTTTTGATTCAAAATTTAATGGCCAAGATGCTCCACAATGGGGCAGAAGCTGTTGTCGTGGAGGCTTCTTCTCATGGACTTGCTTTAGGAAGGTTCAATGAAGTTGATTTTGATATTGCTGTATTCACAAATTTAACGAGAGATCAAATGGGTTTCCATGAGTCAGAAGAAGAATATAGGGATGCTCAATTAAAGCTTTTCTCTAAAATGGTTGACCCAGACCGTCATAGGAAAATTATCAACATTGACGACCCAAATGCATCTTTCTTTATTGCACAAGGAAACCCAGATGTGCCTGTTATCACATTTTCAATGGAGAAAAAAAATGTGGATGTTTATCCCCTGAAATTTGAATTGTCATTGTTTGAGACTCAGGTTTTGGTGAATACTCCTAATGGTATATTGGAGATATCATCAGGGTTGCTTGGAAGGGATAACATTTACAACATTCTTGCTGCAGTGTCAGTCGGGATTGCTGTTGGAGCGCCATTGGAGGACATTGTTAGAGGAATTGAAGAGGTTGATTCTGTTCCAGGGAGGTGTGAGCTTATTGATGAGGAACAAGCGTTCGGCGTGATAGTGGATTATGCGCATACTCCTGATGGCTTGTCCAGACTACTAGATTCTGTGAGGGAGCTTGGACCCAGGAGGATAATCACTGTTGTTGGTTGTTGCGGAGAAAGGGACCGAGGAAAAAGGCCCATGATGACGAAAATTGCCACGGATAAAAGTGACGTTACAATTCTGACTTCTGATAATCCAGGCACTGAAGATCCATTGGACATCTTGGATGATATGCTGGCTGGAGTTGGATGGACAATGCAGGATTACTTGAAACACGGTGAGAATGATTATTATCCACCTCTTTCAAATGGCCACCGCCTTTTCTTGCATGATATTAGAAGGGTAGCTGTACGTTGTGCTGTTGCTATGGGTGAGGGAGGTGATATGGTGGTGGTTGCTGGGAAAGGCCATGAAACATATCAAATAGAGGGTGACAAGAAAGAGTTCTTTGATGATCGAGAAGAGTGCCGGGAAGCATTGCAATATGTTGATGAGCTTCACCAAGCTGGAATAGACACAAGCGAGTTTCCATGGCGGAAGTACTTGATTGATTTTTCTTTTTTTTACTCAATTATCCATGGGCGACTATGCAGGTTACCAGAAAAGCGAGAAGTTGGTATTGTTGGATATGGCTTGGAAATTGGCATGCTCGATGAACAAGTTTATCAGAACATCTGGGACTATGGGAAAGCAAGGAGGCTGAAGGCTGAACAATTGAGTGGTTTAAGGTATGTGGAGAATTTTCTCAAAGCTTTTCCCTTAATGTCAGTTGGGTTTAGGGAGTAG 2562 44.03 MAFATTFLPIPPFLCPHHHLLSLKPRLHFQLRPSTLTLRAPPLSAIGPDGKFYPDPSEDEPPEAPEDSAHGVSKYQQIYRQAARARKLEEEDFKKHQSTYLAAIADVEDAPDNPESLDSATYSDDIFGEIDKAISMKRKEFVKQGLLKPNPKKEQVDVEDVVEGIEELEPEEVVDLEEINELQGLTMISEDEEEEEDEPENFDERDSELQNKRRSSSLSPSFDLDFDSYGKAMARIVEPKFKMTLAELLDESKVVPVSVFGNLEVEITGIQHDSRVVSSGDLFVCCVGRNTDGHLFLTEADKRGAVAVVASKEIDIEQTLGCKALVIVEDTDTVLQALAASFYRYPSKNMAVIGITGTSGKTTTAFLVKGMYEAMGLRTGMLSTVDSYVHGENKLESPNTTPDAVLIQNLMAKMLHNGAEAVVVEASSHGLALGRFNEVDFDIAVFTNLTRDQMGFHESEEEYRDAQLKLFSKMVDPDRHRKIINIDDPNASFFIAQGNPDVPVITFSMEKKNVDVYPLKFELSLFETQVLVNTPNGILEISSGLLGRDNIYNILAAVSVGIAVGAPLEDIVRGIEEVDSVPGRCELIDEEQAFGVIVDYAHTPDGLSRLLDSVRELGPRRIITVVGCCGERDRGKRPMMTKIATDKSDVTILTSDNPGTEDPLDILDDMLAGVGWTMQDYLKHGENDYYPPLSNGHRLFLHDIRRVAVRCAVAMGEGGDMVVVAGKGHETYQIEGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRKYLIDFSFFYSIIHGRLCRLPEKREVGIVGYGLEIGMLDEQVYQNIWDYGKARRLKAEQLSGLRYVENFLKAFPLMSVGFRE 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7366291 7369689 + BLOR11521 Blo03g00340 57804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00340 853 MobiDBLite consensus disorder prediction 187 204 - -
Blo03g00340 853 Pfam Mur ligase family, glutamate ligase domain 581 664 IPR004101 GO:0009058|GO:0016881
Blo03g00340 853 MobiDBLite consensus disorder prediction 40 73 - -
Blo03g00340 853 MobiDBLite consensus disorder prediction 53 67 - -
Blo03g00340 853 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 243 752 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Blo03g00340 853 SUPERFAMILY MurE/MurF N-terminal domain 243 346 IPR035911 -
Blo03g00340 853 PANTHER MUR LIGASE FAMILY MEMBER 221 766 - -
Blo03g00340 853 TIGRFAM murE: UDP-N-acetylmuramyl-tripeptide synthetase 265 753 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Blo03g00340 853 Gene3D - 586 763 IPR036615 GO:0009058|GO:0016881
Blo03g00340 853 Pfam Mur ligase middle domain 355 560 IPR013221 GO:0005524|GO:0009058|GO:0016881
Blo03g00340 853 Pfam Mur ligase family, catalytic domain 266 343 IPR000713 GO:0009058|GO:0016881
Blo03g00340 853 Gene3D - 244 344 - -
Blo03g00340 853 SUPERFAMILY MurD-like peptide ligases, catalytic domain 346 578 IPR036565 GO:0005524|GO:0009058
Blo03g00340 853 MobiDBLite consensus disorder prediction 185 219 - -
Blo03g00340 853 Gene3D - 346 584 IPR036565 GO:0005524|GO:0009058
Blo03g00340 853 PANTHER UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE MURE HOMOLOG, CHLOROPLASTIC 221 766 - -
Blo03g00340 853 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 581 753 IPR036615 GO:0009058|GO:0016881
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00340 - - - csv:101217207 1186.02
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g313 . . . . . . . Bma14g00701 . . Cma02g01444 . Car02g01212 . . . Cpe05g00342 . . . . . . . . . . . . . . Cone8ag0299 Cone12ag0305 . . . Csa05g00273 Chy09g01235 . Blo03g00340 . Bda07g00481 . . . . . . Cmo02g01481 . . . . . . . Bhi12g00272 . . . Hepe06g1538 . Lcy12g1641 Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Lsi09g00249 . . Cme09g01769
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006982 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00340 Blo_Chr03 FPKM 2.954762 3.233269 2.675047 2.88144 2.437397 2.089652 2.406112 1.917268 2.062788 2.45998