Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00342 ATGAGCGGACACGACTCCATATACTTCTCCACCACCAAGAAGGGAGAAATCCCTGAGCTCAAGGGGGAGCTCAATTCTCAGTACAAGGTGTGCTATGCGCATAAGCAAGCCGAAATGGGAGCTTGCTGTTGTTGTTTTCGGAAAAGAGCTGAGGTGAATACTTCTCCAGCACATTATTGTTTCGCATCAGAAAGGCAAGAGCATGTTCCTCTGTCATCTCAGCATTCCCCTATCCCTGCATTTTCATCACGGCTTCTGGTGGATACAAATTTGGATACTTCAATTCCTGATACATACAGACCACCTCCTATACCGATGCCATATGATACTACATTTGGACATCCACTTATTTCATTAGTTGCCCAGGCAACTGAGGGCGACAAGAATGACACAGATAAGCAGACAACAAATTCTAGTTCTGCTCAAGAAACTGTAGGTGGCCATGCTCAAGAACCCTCGGTGATGTCTGAAAACATGAATGAATGCTACTGCAAACTCAAAATTGGTGAAGAAATTGAGATTTCAAAGTCAGTGGAGTCTATAGTTTTAGACTTTGAGGAGGATTCGTGTCCCATCTGTTTGGATGAATATGACAAAGAGAATCCGAAATTGACCACAAAGTGTGACCATTATTTCCATCTTGCATGCATTCTTGAATGGATGGAAAGAAGTAATAGCTGTCCAGTTTGTGATCAGGTGTATCTTACTTTGTGTTGCGCTTTGGTTTTCTCCGCCATTGGGGCATATCTGCATATACTGTGGAACGTAGGTGGCATTTTGATGACATTGGCATGCGTAGGAAGTATATATTGGCTTAAGGCTACTCCTCCATACGAAGAGATAAAGAGGACTGACATCCTGATGGGAGCTGCCTTGTTTGAAGGCGCTTCAGTGGGTCCTTTGATTGAACTTGCCATTAAAGTTGATCCAAGTTACTGCTTTGTAAGAACTGCCTTGGCCTTCAGTTGCTTTTTAGGAGCAACAATGCTGTCTACAGCCCTCTTTATATTTGAGGTACTTAATTTTCCTCTGTCATCCTTGCAATTCGACTTTGGTCTCCTGCTGTTTGTTGGATACATGGTGGTGGACACTCAGGACATAATCGAGAGAGAACACTTGGGTGATTTGGATACCGTTAAACATGCATTAACTCTTTTCACTGATTTTGTTGGTGTCTTTGTCAGAATTCTCTTTATCATGGTATGCATATAA 1212 42.57 MSGHDSIYFSTTKKGEIPELKGELNSQYKVCYAHKQAEMGACCCCFRKRAEVNTSPAHYCFASERQEHVPLSSQHSPIPAFSSRLLVDTNLDTSIPDTYRPPPIPMPYDTTFGHPLISLVAQATEGDKNDTDKQTTNSSSAQETVGGHAQEPSVMSENMNECYCKLKIGEEIEISKSVESIVLDFEEDSCPICLDEYDKENPKLTTKCDHYFHLACILEWMERSNSCPVCDQVYLTLCCALVFSAIGAYLHILWNVGGILMTLACVGSIYWLKATPPYEEIKRTDILMGAALFEGASVGPLIELAIKVDPSYCFVRTALAFSCFLGATMLSTALFIFEVLNFPLSSLQFDFGLLLFVGYMVVDTQDIIEREHLGDLDTVKHALTLFTDFVGVFVRILFIMVCI 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7392899 7410841 - BLOR11523 Blo03g00342 57806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00342 403 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 39 234 - -
Blo03g00342 403 MobiDBLite consensus disorder prediction 133 152 - -
Blo03g00342 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 236 IPR013083 -
Blo03g00342 403 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Blo03g00342 403 Pfam Inhibitor of apoptosis-promoting Bax1 231 400 IPR006214 -
Blo03g00342 403 SUPERFAMILY RING/U-box 184 236 - -
Blo03g00342 403 SMART ring_2 190 230 IPR001841 -
Blo03g00342 403 Pfam Ring finger domain 188 230 IPR001841 -
Blo03g00342 403 MobiDBLite consensus disorder prediction 125 152 - -
Blo03g00342 403 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 39 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00342 - - K21889 mnt:21411586 237.269
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g00342 Blo19g00134 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00218 Blo-Chr3:4954457 Blo03g00342 Blo-Chr3:7392899 1.94E-56 dispersed
Blo03g00342 Blo-Chr3:7392899 Blo18g00416 Blo-Chr18:4519272 3.09E-26 dispersed
Blo03g00511 Blo-Chr3:19283667 Blo03g00342 Blo-Chr3:7392899 5.30E-44 transposed
Blo11g00526 Blo-Chr11:4873417 Blo03g00342 Blo-Chr3:7392899 3.03E-06 transposed
Blo17g00916 Blo-Chr17:30032687 Blo03g00342 Blo-Chr3:7392899 4.17E-37 transposed
Blo19g00202 Blo-Chr19:9247745 Blo03g00342 Blo-Chr3:7392899 4.84E-70 transposed
Blo19g00330 Blo-Chr19:21899238 Blo03g00342 Blo-Chr3:7392899 2.20E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g258 . . . . Bpe05g00391 . . Bma14g00098 . . . Cma15g01324 Car02g00696 Car15g01189 . . . . . . . . . . . . . . . . . Cone8ag0586 Cone12ag0578 . . . Csa05g00157 Chy09g01341 . Blo03g00342 Blo19g00134 . Bda09g00634 Bpe08g00907 Bpe11g00374 . . . . Cmo15g01388 . . . . . . Bhi12g00077 . . . . . Lcy12g1509 Cla01g00139 Cam01g0144 Cec01g0141 Cco01g0146 Clacu01g0139 Cmu01g0139 Cre09g2367 Lsi09g00130 . . Cme09g01888
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004601 2 3 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00342 Blo_Chr03 FPKM 0.099098 0.0 0.0 0.0 0.0 0.0 0.0 1.738052 2.11185 1.854738