Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00378 ATGCAGGAACCAGGCTTGGGAATGATGGCATCCGCCGCCGCCGGCGGTGGCTCTAGCTTGAGCGGCGAAGTATCGATCTCCGGCGACCACCATCACCGGCAAATCAAGGTTGAGATAGCCGCTCATCCCATCTACGAGCAGCTTCTCGCCGCCCACGTGGCTTGTCTTCGTGTAGCTACCCCTATTGATCAGTTGCCGCTCATAGACGCGCAGCTGGCTCAATCGGAACATCTTTTACGCTCTTATGCGGCGCAGTCTCAACATCATCAAGTCCATTCTCTCTCTCCCCATGAGCGCCAAGAGCTTGACAACTGCTTGGTACTAACTTCTTCTTCTTGCAATTTTCATGGCTAA 354 54.24 MQEPGLGMMASAAAGGGSSLSGEVSISGDHHHRQIKVEIAAHPIYEQLLAAHVACLRVATPIDQLPLIDAQLAQSEHLLRSYAAQSQHHQVHSLSPHERQELDNCLVLTSSSCNFHG 117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8848352 8848705 - BLOR11559 Blo03g00378 57842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00378 117 MobiDBLite consensus disorder prediction 1 27 - -
Blo03g00378 117 SMART KNOX1_2 33 77 IPR005540 GO:0003677|GO:0005634
Blo03g00378 117 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 105 - -
Blo03g00378 117 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 105 - -
Blo03g00378 117 Pfam KNOX1 domain 35 76 IPR005540 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00378 - - - cmos:111459669 144.05
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g00378 Blo19g00301 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00378 Blo-Chr3:8848352 Blo12g01065 Blo-Chr12:28422696 5.75E-18 dispersed
Blo19g00301 Blo-Chr19:19356768 Blo03g00378 Blo-Chr3:8848352 3.47E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g420 . . . . . . Bma07g01627 Bma14g00577 . . Cma02g01492 Cma15g01189 Car02g01251 Car15g01077 . . Cpe05g00299 . . . . . . . . . . . . . . . . Cone6ag0737 Cone9ag0742 . Csa05g00334 Chy09g01175 . Blo03g00378 Blo19g00301 Bda07g00506 Bda09g00064 Bpe08g01469 Bpe11g00693 . . . Cmo02g01531 Cmo15g01252 . . . . . Cpe13g00185 Bhi12g00327 . . Lac11g2153 Hepe06g1595 . Lcy12g1713 Cla01g00313 Cam01g0323 Cec01g0315 Cco01g0332 Clacu01g0325 Cmu01g0309 Cre09g2201 Lsi09g00319 . . Cme09g01708
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003434 2 1 2 2 3 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 4 3 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00378 Blo_Chr03 FPKM 17.851852 19.550665 12.024289 11.741882 36.824551 38.024467 39.652714 10.348349 11.281218 11.835327