Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00379 ATGGAAGATCCCGCTGCATCTCGGTTGAATTCAGCTCTTCGAAATTCCTCTTCATCTTCTTCCTCTTCATCTTCTTCTTCCATGTTTAATTTACCTGTGACAATGTCCCGGAATTCTTCGTCTTTCGAAACCCTAACCCCATCTCGCCATATTGATCGGATGATTAATCTTAATCACCGTAAATCCCCTTCCAAAGCTATCTATTCTGATAGGTTTATTCCGAGTAGATCGGGTTCTAATTTCGCATTGTTCGACATCTCTCCTTCGGCTAATTCTCCGGGCGAAGATAGCTCCAGTGCATATGCGACGCTTATTCGAACAGCGCTGTTTGGTCCTCATTCCGGAGTGGTTTCTCCAGCGACGCCGGAAAAGAGTAATATTTCGATGAATTTGCCCAACCAAAATATTTTTCGGTATAAAACTGAGACTCGTCGTTCTATGCAATCTCTCTCGCCATTTGGTTTTGACGACGTAGTTCCGGGTGTTAATCATACTTCAACAAAGGCACCTCGAAAGGTTACGCGCTCGCCATATAAGGTTCTAGACGCACCAGCATTGCAAGATGATTTTTATTTGAATCTTGTAGATTGGTCTGCCCATAATATTCTGGCTGTTGGCTTGGGTAACTGTGTTTATTTGTGGAATGCATGTAGTAGCAAGGTAACTAAATTGTGCGACTTGGGAAATGATGACACTATCTGTTCAGTTGGTTGGGCTCATCGTGGAACTCATCTAGCTGTTGGGACTAGCACTGGCAAAGTTCAGATTTGGGATGCATCTCGCTGCAAAAGAGTAAGAACCATGGAAGGTCATCGTTTACGAGTTGGGACTTTAGCTTGGAGTTCATCTTTTTTGACTTCTGGTAGCAGGGACAAAAGTATTCTTCAACGTGATATTCGTGCTCAGGAAGACTTTGTGAGTAAACTATCTGGGCACAAGTCAGAGTCTTTTTTGTTTATTTCATTTTCATATGCACTTTTGCATCTTCACTTTGGAAAACGGCAATGGTTCATTTCTTTGATTAACTTAAAGATAGTTGTTTGTGGATTGAAATGGTCTTATGATAATCGCGAGTTAGCATCGGGCGGTAATGACAACAGACTATTTGTTTGGAATCAACATTCCACCCAACCTTTGCTTAAATATTGTGAGCATACGGCTGCTGTAAAAGCAATTGCATGGTCTCCCCATCTTCATGGACTTCTTGCATCTGGGGGAGGGACGGCTGATAGATGTATACGTTTCTGGAACACGACGACAAACTCACAATTGAGCTGCATCGACACAGGAAGTCAGGTGTGCAATCTTGTGTGGTCCAAGAATGTGAACGAACTGGTTAGCACCCATGGATATTCTCAAAATCAAATAATAGTTTGGAGATACCCAGCCATGTCAAAGTTGGCGACACTAACGGGGCATACATACCGAGTGCTTTATCTTGCCATATCTCCTGATGGACAGACCATTGTAACTGGAGCTGGAGATGAAACGCTTAGATTTTGGAATGTCTTCCCTTCCCTTAAATCTCAGGTGAAGATTTTAATCCTTGTTCTTCTTCCACTTAGTGATGTTCTGAGATTTGAAGAGCTTAGTTATTCTTCTTAA 1605 42.31 MEDPAASRLNSALRNSSSSSSSSSSSSMFNLPVTMSRNSSSFETLTPSRHIDRMINLNHRKSPSKAIYSDRFIPSRSGSNFALFDISPSANSPGEDSSSAYATLIRTALFGPHSGVVSPATPEKSNISMNLPNQNIFRYKTETRRSMQSLSPFGFDDVVPGVNHTSTKAPRKVTRSPYKVLDAPALQDDFYLNLVDWSAHNILAVGLGNCVYLWNACSSKVTKLCDLGNDDTICSVGWAHRGTHLAVGTSTGKVQIWDASRCKRVRTMEGHRLRVGTLAWSSSFLTSGSRDKSILQRDIRAQEDFVSKLSGHKSESFLFISFSYALLHLHFGKRQWFISLINLKIVVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPLLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSQLSCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPAMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSLKSQVKILILVLLPLSDVLRFEELSYSS 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8867772 8875462 - BLOR11560 Blo03g00379 57843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00379 534 ProSitePatterns Trp-Asp (WD) repeats signature. 489 503 IPR019775 -
Blo03g00379 534 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 24 316 IPR033010 GO:0010997|GO:0097027|GO:1904668
Blo03g00379 534 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 343 512 IPR033010 GO:0010997|GO:0097027|GO:1904668
Blo03g00379 534 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 470 503 - -
Blo03g00379 534 SUPERFAMILY WD40 repeat-like 187 503 IPR036322 GO:0005515
Blo03g00379 534 Pfam Anaphase-promoting complex subunit 4 WD40 domain 221 282 IPR024977 -
Blo03g00379 534 Pfam WD domain, G-beta repeat 347 372 IPR001680 GO:0005515
Blo03g00379 534 Pfam WD domain, G-beta repeat 466 502 IPR001680 GO:0005515
Blo03g00379 534 Pfam WD domain, G-beta repeat 377 417 IPR001680 GO:0005515
Blo03g00379 534 ProSiteProfiles Trp-Asp (WD) repeats profile. 470 503 IPR001680 GO:0005515
Blo03g00379 534 PANTHER PROTEIN FIZZY-RELATED 1 24 316 - -
Blo03g00379 534 PANTHER PROTEIN FIZZY-RELATED 1 343 512 - -
Blo03g00379 534 ProSiteProfiles Trp-Asp (WD) repeats profile. 347 381 IPR001680 GO:0005515
Blo03g00379 534 MobiDBLite consensus disorder prediction 9 29 - -
Blo03g00379 534 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 267 IPR001680 GO:0005515
Blo03g00379 534 SMART WD40_4 218 258 IPR001680 GO:0005515
Blo03g00379 534 SMART WD40_4 463 502 IPR001680 GO:0005515
Blo03g00379 534 SMART WD40_4 420 460 IPR001680 GO:0005515
Blo03g00379 534 SMART WD40_4 261 298 IPR001680 GO:0005515
Blo03g00379 534 SMART WD40_4 375 417 IPR001680 GO:0005515
Blo03g00379 534 SMART WD40_4 333 372 IPR001680 GO:0005515
Blo03g00379 534 SMART WD40_4 174 215 IPR001680 GO:0005515
Blo03g00379 534 MobiDBLite consensus disorder prediction 1 29 - -
Blo03g00379 534 Gene3D - 167 506 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00379 K03364 CDH1, FZR1; cell division cycle 20-like protein 1, cofactor of APC complex - mnt:21405920 803.127
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00379 Blo-Chr3:8867772 Blo04g00115 Blo-Chr4:956539 0 dispersed
Blo03g00379 Blo-Chr3:8867772 Blo13g00069 Blo-Chr13:1082324 1.55E-105 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g425 . . . . . . . Bma14g00575 . . Cma02g01496 Cma15g01185 Car02g01258 Car15g01073 . . Cpe05g00294 . . . . . . . . . . . . . . . . Cone6ag0735 Cone9ag0739 . Csa05g00338 Chy09g01171 . Blo03g00379 . Bda07g00507 . . Bpe11g00694 . . . Cmo02g01537 Cmo15g01249 . . . . . Cpe13g00188 Bhi12g00333 . . Lac11g2159 Hepe06g1599 . Lcy12g1717 Cla01g00318 Cam01g0328 Cec01g0320 Cco01g0337 Clacu01g0330 Cmu01g0314 Cre09g2197 Lsi09g00323 . . Cme09g01704
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006983 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37