Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00380 ATGGCCCAGAACGATGGCGAAAGAGAAGCAAATCTTCCTCTGGTTCTCTTGCATCGTCTTCCTTTCTACAATATACCGCTGAGAGACCGCATCCTCAGCAACTTCCATCTCCTCGATCCCCATAGCTCGCCCGAGCCTACCCACTCTTTCATCGCTCGTCATTCCCCCTCCATTCGAGCTCTTATCTGCGTGAGTCCGACACCTCTCCCCTCTGATACTCTCCACCTCCTCCCGGCGCTGGAGCTGGTTGTGTGTTCCAGCGCCGGTATTGATCACGTCGATGTCGCAGAGTGCCGTCGAAGGGGCATTACTGTAACAAATGCCGGCAGTGCCTTTGCAGAGGACACCGCCGATTTGGCGGTGGCGCTGTTGATCGATGTATTGCGGCGGCTTTCCGAGGGTGATCGATATGTGCGGTCCGGGCTATGGTCAGTGAACGGCGATTTCCCTCTTGGATCAGCAGTAAACAGAAAGCGAGTCGGAATTGTTGGGCTCGGAAGGATCGGCTCTGAAATTGCAGTACGACTCCAAGCTTTTGGCTGTATCATAGCTTACACTTCAAGGACAAAGAAGGAATCCATGCCCTATAAGTACCACGAAAATGTGTCCGACCTAGCAGCCTATACCGATGTGCTAATAATTTGTTGCGCTCTAACCGAACAAACATTCCACATTGTCGACGAAGCCGTTATTGAAGCGCTGGGAAAGGAAGGGGTGATAATAAACGTGGGGCGGGGGGCTCTGGTCGACGAGAAGGCCCTCGTTCGAGCATTGAAGGACGGAGAGATTAAGGGTGCAGGGCTTGATGTGTTCGAGAACGAGCCTAATGTGCCGGCACAACTAATGGGGATGGATAATGTGGTGTTGTCTCCTCATCGGGCTGTGCTCACTCCAGAATCGCTCGATGCAGTCGTCGACGTCGTTGTTGCCAACTTGGAGGCGTTCTTCTCAAATCGGCCTCTGCACTCTGCTGTCCAACTTGAATGA 987 53.09 MAQNDGEREANLPLVLLHRLPFYNIPLRDRILSNFHLLDPHSSPEPTHSFIARHSPSIRALICVSPTPLPSDTLHLLPALELVVCSSAGIDHVDVAECRRRGITVTNAGSAFAEDTADLAVALLIDVLRRLSEGDRYVRSGLWSVNGDFPLGSAVNRKRVGIVGLGRIGSEIAVRLQAFGCIIAYTSRTKKESMPYKYHENVSDLAAYTDVLIICCALTEQTFHIVDEAVIEALGKEGVIINVGRGALVDEKALVRALKDGEIKGAGLDVFENEPNVPAQLMGMDNVVLSPHRAVLTPESLDAVVDVVVANLEAFFSNRPLHSAVQLE 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8875870 8877057 - BLOR11561 Blo03g00380 57844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00380 328 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 7 328 - -
Blo03g00380 328 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 37 149 - -
Blo03g00380 328 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 50 325 IPR006139 GO:0016616|GO:0051287
Blo03g00380 328 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 113 294 IPR036291 -
Blo03g00380 328 CDD HPPR 13 317 - -
Blo03g00380 328 PANTHER GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE HPR3 7 328 - -
Blo03g00380 328 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 121 294 IPR006140 GO:0051287
Blo03g00380 328 Gene3D - 113 297 - -
Blo03g00380 328 Gene3D - 33 320 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00380 K15919 HPR2_3; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] - pop:7479242 399.053
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00380 Blo-Chr3:8875870 Blo16g00625 Blo-Chr16:24991755 2.32E-117 dispersed
Blo16g00438 Blo-Chr16:17333338 Blo03g00380 Blo-Chr3:8875870 1.87E-17 dispersed
Blo03g00380 Blo-Chr3:8875870 Blo05g00091 Blo-Chr5:862189 1.96E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g430 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo03g00380 . Bda07g00029 . . . . . . . . . . Car06g00956 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000708 2 4 2 3 2 4 2 4 3 4 2 5 3 4 4 3 4 3 3 3 5 3 3 4 3 4 5 3 1 2 97