Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00382 ATGACTCAGACCAGATTCTTTAGTTCCCAGAAGTTTAGACCGGACGAGGAACCGGAACCCGCGACTAGCGGCGGCGGCGGAGGAACGGCCATGAGAGTCATAGTGCCTTTACAAGGCGTGGTTCAAGGCAGAGGAGGTCTAGTTTTGGGCTCTATTATACCTTGCGCGCTGTTTTACTTCCTACAGCTTTACATGAAACGGAATCGATCCGGGGGGAACTCTGCAACTCGTACGCAGTCTCCAGAACGGGAGGAGGGTTCGGCGTTGACGACAAAATTGCTGGAGGCTGGTGCGATTCCTCGGACATTCTCTCGCACCCATCTCTCTCCCAGGTCGAGCGGGCCTACCTATGTCTCGGATCGGGCTGGATTGGTTGGTAGAAGTGAGGGTTCAGCTTACCAAGCAGGGTTAAGCATGGCATTGGAGGATCCGTATGACGAGGTGAATAATCCGGATGGGATTATTCAGCTTGGGTTTGGTGAAAACAAGTTGTGCTTGGACTTAGTTCGAAAATGGGTGGCGGAGAATGCGAGGGATGCCTTATTTGGGGGAGGAGACGGCGGGGAGATAAGTTTTGGAGCCACTGCTACCTACCAGCCTTTTGATGGATTGATGGAGTTGAAAGTGGCCGTGACCGGATTCATGTCTCAAGTTATCGGAAACGAAGGCTTCTTCAATCACTCACAAATTGTATTAACAGCTGGTGTGACCTCTGCCATTGAAATTCTCAGCTTCTGCTTAGCAGACCCCGGAAGTGCTTTTCTGGTTCCTACACCGTTCTATCCCGGCTTTGAAAGTGACATAAAATGGCGGACTGGAGTGGAGATAGTGCCTGTTCCATGCCAGAGTACTGACAACTTCAGATTAAACATGACTTCTGTTGACCAAGCGTTTAACCAGGCGAAGAAACGAGGGCAAAAAGTCCGTGGAATCGTAATTTTGATGCCTTCGAATCCCGTTGGAAATATGCTTGATCGGGAAACGCTATACAGCCTTCTAGACTTTGCGAGAGACAAAAACATCCATATTGTATCGAATGAAATGCTTGCAGGCTCTAGCTATGGGAGCGAAGAGTTTGTAAGTATGGTGGACATTGTTGGGTCGGAAGATCTCGACAGGGACAGAGTTCATTTAGTCTACGATTTATCAAAAGAGCTCCCTCTTCCAGGTTTTCGAGTTGGTGCCATCTACTCTTTCAACGACAACGCTCTTTCTGCTGCAAAAAAACTATCGAGATTCTCACCAGTCTCTGCTCCAACTCAGAGCCTGCTCATTTCTATGCTTTCTGACGCAAAATTTGTGCAAAGATTGATAAAGAATAACAGGGAAAGGCTAGGAGAAATCCATAGAAAAATGGTCGGAGGCTTAAGAGAACTCGGAATTGAATGTGGCAAAAGCAGTGGAGGTGAGTATTGTTGGGTTAATTTGGGAAAATTTATTTGCTCGAATAGTGAAAAAGGCGAGCTTGAGCTCTGGGATAAGCTATTGAATTTGGCTCGAGTTAATGTGATTCCTGGTTCTCTCTGTCACTGTCCCGAACCGGGTTGGTTCTTGTTGTGTTTTTCTGGTTTGACTGATAATGAAATTCTTGTAATGCTGGAACGAATTCGGAAAATGATTACCGATGCGTATAATTCTCAAAGTTGA 1647 46.87 MTQTRFFSSQKFRPDEEPEPATSGGGGGTAMRVIVPLQGVVQGRGGLVLGSIIPCALFYFLQLYMKRNRSGGNSATRTQSPEREEGSALTTKLLEAGAIPRTFSRTHLSPRSSGPTYVSDRAGLVGRSEGSAYQAGLSMALEDPYDEVNNPDGIIQLGFGENKLCLDLVRKWVAENARDALFGGGDGGEISFGATATYQPFDGLMELKVAVTGFMSQVIGNEGFFNHSQIVLTAGVTSAIEILSFCLADPGSAFLVPTPFYPGFESDIKWRTGVEIVPVPCQSTDNFRLNMTSVDQAFNQAKKRGQKVRGIVILMPSNPVGNMLDRETLYSLLDFARDKNIHIVSNEMLAGSSYGSEEFVSMVDIVGSEDLDRDRVHLVYDLSKELPLPGFRVGAIYSFNDNALSAAKKLSRFSPVSAPTQSLLISMLSDAKFVQRLIKNNRERLGEIHRKMVGGLRELGIECGKSSGGEYCWVNLGKFICSNSEKGELELWDKLLNLARVNVIPGSLCHCPEPGWFLLCFSGLTDNEILVMLERIRKMITDAYNSQS 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8932245 8935100 + BLOR11563 Blo03g00382 57846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00382 548 Gene3D Aspartate Aminotransferase, domain 1 143 535 IPR015422 GO:0003824
Blo03g00382 548 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 26 541 - -
Blo03g00382 548 Pfam Aminotransferase class I and II 156 536 IPR004839 GO:0009058|GO:0030170
Blo03g00382 548 SUPERFAMILY PLP-dependent transferases 142 540 IPR015424 -
Blo03g00382 548 Gene3D - 177 430 IPR015421 GO:0003824
Blo03g00382 548 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 251 272 - -
Blo03g00382 548 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 229 249 - -
Blo03g00382 548 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 375 399 - -
Blo03g00382 548 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 341 364 - -
Blo03g00382 548 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 305 329 - -
Blo03g00382 548 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 407 430 - -
Blo03g00382 548 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 157 183 - -
Blo03g00382 548 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 192 208 - -
Blo03g00382 548 PANTHER AMINOTRANSFERASE ACS12-RELATED 26 541 - -
Blo03g00382 548 MobiDBLite consensus disorder prediction 1 28 - -
Blo03g00382 548 CDD AAT_like 155 538 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00382 K14270 ACS10_12; aminotransferase - twl:119987545 667.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00382 Blo-Chr3:8932245 Blo07g00461 Blo-Chr7:9784698 5.13E-41 dispersed
Blo03g00382 Blo-Chr3:8932245 Blo09g00131 Blo-Chr9:3362327 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g453 . . . . . . . . . . . Cma15g01179 . Car15g01067 . . . . . . . . . . . . . . . . . . . . . . Csa05g00357 Chy09g01150 . Blo03g00382 . . . . Bpe11g00697 . . . . Cmo15g01239 . . . . . Cpe13g00195 Bhi12g00353 . . Lac11g2187 Hepe06g1617 . Lcy12g1741 Cla01g00335 Cam01g0348 Cec01g0344 Cco01g0356 Clacu01g0352 Cmu01g0332 Cre09g2178 Lsi09g00361 . . Cme09g01682
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002106 1 2 3 1 2 2 2 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 2 2 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00382 Blo_Chr03 FPKM 3.089981 2.236441 3.009696 2.938664 2.771709 2.552162 3.04289 5.690736 5.789616 5.088356