Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00386 ATGGAAGGTGGGAGGGAAGGTGGTGTAAGTAGTGGGGTTACAGTGGTAGGATCAGATGCTCCGTCTGACTACCATCTTGCTCCGAGGACGGAGAACTCAGTCCAGACAGGTGGATCAACAGCGACGCCGGCGCAGCCAACTTCTGCTTCAGCTAAGCCTGTGGCGGCACCTCCGTCAGCGGTCTTGCCGTTGAAGAAAAAGAGAGGTAGGCCTAGGAAGTACGGACCAGATGGAACAGTCACTGTGGCGCTTTCACCGAAGCCGATATCGTCATCGGCCCCGCCTCCGGTTATTGACTTCTCCGTTGAGAAGCGGGGAAAGATACGGCCGGCTAACTCAGTGAGCAAAACCAAATACCAAGTGGAGAATTTGGAATTACTCTGCTTCCTATTGTCATCTACAAGACTTAGAAGAACAAACTTTGGATTATATGGGTCTATTTTCTCGTTGGGAATAAGTGGGTCCTCTGATTCTAGTCCTAATAGAGATCTTGTATTGTATGGCGGCCATGAAAAGCTAAGGAGCTTTGTGGGTGAATGGGTTGCTTGCTCCGTTGGTGCTAATTTCACACCCCATATTATTACTGTCAACTCTGGAGAGGACGTCATGATGAAGATTATATCATTTTCCCAACAAGGGCCTCGAGCAATCTGCATTATTTCAGCAAATGGTATGATCTCTAGCGTCACTCTTCGCCAACCTGATTCGTCGGGAGGAACATTAACTTACGAGGGTCGATTTGAAATACTGGCTTTGTCTGGGTCATTCATGCCGAGTGATAGTGGAGGAACGAGAAGTCGATCGGGTGGAATGAGCGTTTCGTTAGCTAGTCCTGACGGTCGAGTTGTAGGAGGTGGAGTAGCTGGTTTACTAGTAGCTGCCAGTCCCGTCCAAGTCGTAGTAGGGAGTTTTATCTCTGGAAATCAACACGAACAAAAACCCAAGAAGCAAAAATACGATGCCACGTCGACAGCGCAAGTAACTGCAGAGACTCCGGCTTCAAGCACGGATCTGAAATCTAATGTCTCAGCCTCGAATCCGCGTGACGAGAACTGGTCATCTCTGCCATCGGAGTCTAGAAATAAGCCGACTGATATTAATGTGTCGTTGCCGGGCGGATAA 1122 48.93 MEGGREGGVSSGVTVVGSDAPSDYHLAPRTENSVQTGGSTATPAQPTSASAKPVAAPPSAVLPLKKKRGRPRKYGPDGTVTVALSPKPISSSAPPPVIDFSVEKRGKIRPANSVSKTKYQVENLELLCFLLSSTRLRRTNFGLYGSIFSLGISGSSDSSPNRDLVLYGGHEKLRSFVGEWVACSVGANFTPHIITVNSGEDVMMKIISFSQQGPRAICIISANGMISSVTLRQPDSSGGTLTYEGRFEILALSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFISGNQHEQKPKKQKYDATSTAQVTAETPASSTDLKSNVSASNPRDENWSSLPSESRNKPTDINVSLPGG 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9277536 9280265 + BLOR11567 Blo03g00386 57850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00386 373 Pfam Plants and Prokaryotes Conserved (PCC) domain 191 304 IPR005175 -
Blo03g00386 373 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 178 371 - -
Blo03g00386 373 MobiDBLite consensus disorder prediction 28 49 - -
Blo03g00386 373 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 178 371 IPR039605 GO:0003680
Blo03g00386 373 MobiDBLite consensus disorder prediction 319 366 - -
Blo03g00386 373 Gene3D - 191 327 - -
Blo03g00386 373 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 11 122 IPR039605 GO:0003680
Blo03g00386 373 ProSiteProfiles PPC domain profile profile. 186 325 IPR005175 -
Blo03g00386 373 MobiDBLite consensus disorder prediction 1 88 - -
Blo03g00386 373 CDD DUF296 190 281 IPR005175 -
Blo03g00386 373 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 11 122 - -
Blo03g00386 373 MobiDBLite consensus disorder prediction 308 373 - -
Blo03g00386 373 SUPERFAMILY AF0104/ALDC/Ptd012-like 188 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00386 Blo-Chr3:9277536 Blo16g00434 Blo-Chr16:17141839 2.63E-67 dispersed
Blo03g00386 Blo-Chr3:9277536 Blo06g01099 Blo-Chr6:34289484 2.78E-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00386 - - zju:107406129 410.223