Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00389 ATGTTAGTTCCGAAGCTGACGACGTTGTTGAGCAGCTCCATTACCTTCAGTCAGTTCAAACAGATTCAAGCCCTCATCATCCTTAACGGCCTTAATCGCTTGGAGCCTCTTCTAATTCATCGTCTTCTACGCTGCTTTCTCAGCTATTGTAGAACCACATCGGAATACGTCCAACTCGTTCTTCATCATTCGAAACACCCATATGCATTTTCGTGGGGCTGCACTGTCCGGTTCTTCTCCCAACAGGGCCGATTCAAAGAAGCTTTTTCGCATTACGTTCAGATGCAGAGACTCGGCCTTCGACCGAGCACATTTGCTATATCGTCGACTTTAAGAGCTTGTGCCAGGATTTCGCACAAATTAGGTGGAAATTATGTTCATGGCCAGGTTTATAGATTTGGATTTTGTAGATGTGTGTATGTGCAGACAGCTCTTGTGGATTTTTATTCTAAACTGGGGGAAATTGATTCTGCACAGAGAGTTTTCGATAATATGGTTGAGAAAAATGTTGTCTCGTGGAATTCTATCTTGTCTGGTTATTTGAAATCTGGATATTTAAAAGATGCACAGAGGCTGTTTGATGAAATGCCGAAAAAAAATGTTGTATCCTGGAATTGTATGTTGTCTTGGTATGCTGGCAAAGGAAATATGGACGAAGCGTCTTCCTTATTTGAAAAAATAGTCGAGAAGAACACTACTTCGTGGAATATAATGATCAGTGGTTATGTCGAGAATGGAGATATAAAATCAGCTCGTATGCTGTTCGATGAAATGCCCCAACGAAACAATGTTTCGAGGGTTATAATGATTTCAGGATATTCAGGGGTTGGTGATGTAGGGTCTGCTCGCGAACTCTTTGATCAAATGGTTGGGAAAGAGTTGATTCTTTATAATGCCATGATTTCTTGTTATGCACAAAATAGTTTACCAGAGGAGTGCTTAAATGTGTTTATTCAAGTTCTCCAGCCAGAATTGAATATTAATCCAGATCAGAAGACCTTCTCCAGCGCCGTATCTGCTTGTTCGCAGTTGGGTGACTACAAATTTGGGTTTTGGATCGAGTCTTATGCAAAGAAACTTGGAATTGAATTAGACGATCATTTGGCCACAGCTTTCATTGACTTGTATGCAAAATGTGGACTCATAGATAAGGCAAATGAGCTGTTTCAGAGTTTAGGGAAGAAGGATTTGGTTGCCTATTCTGCGATGATCTCTGGATGTGGCATAAATGGCAAAATCTCCAAAGCAATGACGCTATTTAAAGAGATGGTGAATGAAAAAATAAGCCCAAATTTAGTCACTTTCACTGGACTACTAACTGCGTATAATCATGCCGGTTTGGTAGAAGAAGGCTACAAATGCTTCAACTCTATGAAAGACTATGGACTGGTGGCTTCAACCGATCACTATGCAATCATCGTTGACCTTCTAGGTCGAGCTGGACAATTAGAGGAAGCACACAATCTAATTAAGAGCATGCCAATGGAGCCTTATGTTGAGGTTTGGGGGGCTTTGCTTCAAGCTTGTAGATTACACAACAATGTTGAGCTTGGGGAGATTGCTGCTTATCATTGCTTCGAATTAGAGCCAGATGCAGTTGAGTATCGATCTCTACTTTCGAACATTTATGCTTCTGTTGAGAGATGGGATGATTCTAAGAGATTGAGGCAGGTTATGGAGGATAAGTTTGTCTCTAAAATAACCGGGTGTAGTTGGACAGAATAG 1725 40.99 MLVPKLTTLLSSSITFSQFKQIQALIILNGLNRLEPLLIHRLLRCFLSYCRTTSEYVQLVLHHSKHPYAFSWGCTVRFFSQQGRFKEAFSHYVQMQRLGLRPSTFAISSTLRACARISHKLGGNYVHGQVYRFGFCRCVYVQTALVDFYSKLGEIDSAQRVFDNMVEKNVVSWNSILSGYLKSGYLKDAQRLFDEMPKKNVVSWNCMLSWYAGKGNMDEASSLFEKIVEKNTTSWNIMISGYVENGDIKSARMLFDEMPQRNNVSRVIMISGYSGVGDVGSARELFDQMVGKELILYNAMISCYAQNSLPEECLNVFIQVLQPELNINPDQKTFSSAVSACSQLGDYKFGFWIESYAKKLGIELDDHLATAFIDLYAKCGLIDKANELFQSLGKKDLVAYSAMISGCGINGKISKAMTLFKEMVNEKISPNLVTFTGLLTAYNHAGLVEEGYKCFNSMKDYGLVASTDHYAIIVDLLGRAGQLEEAHNLIKSMPMEPYVEVWGALLQACRLHNNVELGEIAAYHCFELEPDAVEYRSLLSNIYASVERWDDSKRLRQVMEDKFVSKITGCSWTE 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9451121 9452845 - BLOR11570 Blo03g00389 57853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00389 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Blo03g00389 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Blo03g00389 574 TIGRFAM PPR: pentatricopeptide repeat domain 296 317 IPR002885 -
Blo03g00389 574 TIGRFAM PPR: pentatricopeptide repeat domain 234 262 IPR002885 -
Blo03g00389 574 TIGRFAM PPR: pentatricopeptide repeat domain 398 431 IPR002885 -
Blo03g00389 574 TIGRFAM PPR: pentatricopeptide repeat domain 202 230 IPR002885 -
Blo03g00389 574 TIGRFAM PPR: pentatricopeptide repeat domain 433 466 IPR002885 -
Blo03g00389 574 TIGRFAM PPR: pentatricopeptide repeat domain 171 202 IPR002885 -
Blo03g00389 574 PANTHER OS07G0578800 PROTEIN-RELATED 166 229 IPR045215 GO:0003723|GO:0009451
Blo03g00389 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Blo03g00389 574 Pfam PPR repeat family 395 442 IPR002885 -
Blo03g00389 574 Pfam PPR repeat family 168 201 IPR002885 -
Blo03g00389 574 Pfam PPR repeat 202 231 IPR002885 -
Blo03g00389 574 Pfam PPR repeat 234 262 IPR002885 -
Blo03g00389 574 Pfam PPR repeat 71 100 IPR002885 -
Blo03g00389 574 Pfam PPR repeat 268 292 IPR002885 -
Blo03g00389 574 Pfam PPR repeat 470 494 IPR002885 -
Blo03g00389 574 Pfam PPR repeat 296 319 IPR002885 -
Blo03g00389 574 PANTHER OS08G0162200 PROTEIN 55 165 - -
Blo03g00389 574 PANTHER OS08G0162200 PROTEIN 166 229 - -
Blo03g00389 574 PANTHER OS08G0162200 PROTEIN 229 574 - -
Blo03g00389 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Blo03g00389 574 Pfam E motif 512 574 IPR046848 -
Blo03g00389 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Blo03g00389 574 PANTHER OS07G0578800 PROTEIN-RELATED 55 165 IPR045215 GO:0003723|GO:0009451
Blo03g00389 574 PANTHER OS07G0578800 PROTEIN-RELATED 229 574 IPR045215 GO:0003723|GO:0009451
Blo03g00389 574 Gene3D Tetratricopeptide repeat domain 396 573 IPR011990 GO:0005515
Blo03g00389 574 Gene3D Tetratricopeptide repeat domain 73 229 IPR011990 GO:0005515
Blo03g00389 574 Gene3D Tetratricopeptide repeat domain 294 395 IPR011990 GO:0005515
Blo03g00389 574 Gene3D Tetratricopeptide repeat domain 230 293 IPR011990 GO:0005515
Blo03g00389 574 SUPERFAMILY TPR-like 133 289 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00389 - - - qsu:111999464 772.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00389 Blo-Chr3:9451121 Blo12g00519 Blo-Chr12:23119116 2.46E-114 dispersed
Blo03g00389 Blo-Chr3:9451121 Blo03g01370 Blo-Chr3:40146283 1.03E-111 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g473 . . . . . . . Bma14g00564 . . . Cma15g01168 . Car15g01057 . . . . . . . . . . . . . . . . . . . . . . Csa05g00369 Chy09g01141 . Blo03g00389 . Bda07g00518 . . Bpe11g00705 . . . . Cmo15g01230 . . . . . . Bhi12g00368 . . Lac11g2208 Hepe06g1629 . . Cla01g00344 . . . . . . . . . Cme09g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010341 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00389 Blo_Chr03 FPKM 3.19213 4.281758 96.624458 105.781601 6.650596 4.771473 5.030852 1538.098389 1675.799072 1445.621948