Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00407 AAAAATATAATAATAATGTCATCCTCTTCTACTCCTACCTTGACTCAGCTGGACCACCTCCCTCCCTCGGAGCAGCTCTGCTACGTCCAATGCAACATATGTGATACTGTCTTAGCGGTGAGCGTTCCTTGCTCCAGTTTGTTCAAGACAGTGACAGTTCGATGCGGCCATTGCACCAACCTCCTGCCAGTGAACATGAGGGGTCTTCTTCTTCCTTCCAACAACCAGTTTCACCAGCTGAGCCATCCTCTCTTTTCACCCTCCCATAACCTTCTGGAAGAGATTCCCAATGTAACACCAAATTTTCTGATCAACCAGAGCATTGCAAATGATTTTGTTATGCCCTCTCGAGGGGTTATGAACGAGCTTCCAAGACCTCCAGCTATAAACAGACCTCCGGAGAAAAGACAGAGAGTTCCTTCTGCATATAATCGCTTCATCAAGGATGAGATTCAACGCATCAAGTCTGTGAATCCAGATATATCACACAGAGAAGCGTTCAGTGCAGCTGCTAAAAATTGGGCCCACTTCCCACACATTCACTTTGGTCTGTTGCCCGACCAGACAATGAAGAAGACAACCATGCGCCAACAGGAAGGAGATGATGTTTTGATGAAAGACGGGTTTGTCGCTGCAGCTAATGTGGATATTTCCCACTTTTGA 663 46.3 KNIIIMSSSSTPTLTQLDHLPPSEQLCYVQCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSNNQFHQLSHPLFSPSHNLLEEIPNVTPNFLINQSIANDFVMPSRGVMNELPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLLPDQTMKKTTMRQQEGDDVLMKDGFVAAANVDISHF 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11414194 11416202 + BLOR11588 Blo03g00407 57871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00407 220 Pfam YABBY protein 22 184 IPR006780 GO:0007275
Blo03g00407 220 Gene3D High mobility group box domain 129 192 IPR036910 -
Blo03g00407 220 PANTHER PROTEIN YABBY 4 6 218 - -
Blo03g00407 220 SUPERFAMILY HMG-box 129 177 IPR036910 -
Blo03g00407 220 PANTHER PROTEIN YABBY 6-RELATED 6 218 IPR006780 GO:0007275
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo02g01054 Blo03g00407 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00279 Blo-Chr1:3523615 Blo03g00407 Blo-Chr3:11414194 1.23E-98 dispersed
Blo03g00407 Blo-Chr3:11414194 Blo12g00165 Blo-Chr12:10789311 1.92E-82 dispersed
Blo11g00921 Blo-Chr11:19326401 Blo03g00407 Blo-Chr3:11414194 9.03E-41 transposed
Blo16g01078 Blo-Chr16:39331050 Blo03g00407 Blo-Chr3:11414194 1.29E-40 transposed
Blo02g01054 Blo-Chr2:40693906 Blo03g00407 Blo-Chr3:11414194 1.92E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12111 PF04690 YABBY 2.00E-70 CL0114 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00407 K25796 - jre:109011373 367.851