Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00415 ATGCACCCTCTGTGCTGTCTCTCTATAGAGAGTTCCGGAGGCGGAGGTAACTTTGGCGATAACTTGTCGGAAGAAGCGGTGCTATCGAAGTCCAGGAGCTTACCGGCGAGTTGTGCAGCTCTTTCCGGCAGATCTAACGGCAATGCCGGAAAATTACAACCTGGATCGGCATCCACCGTAGCTGGAATTCTCTACAAGTGGACGAATTACGGGAAAGGATGGAGATCCAGGTGGTTTTTATTGCGCAACGGCGTTCTCTCCTACGCTAAAATACGCCGGCCAGAAAACCTAAACATCCTAGCACCAAACAACGATATTAGGCTAATCGGAGAAGTTTCAACAAATCGGCTTTCGAGATTGGATGCCGGAGGTGGAAGAAGAAAGCCTCAGAAGTCCATTGGAGTAGCACATCTTAAGATCTTCTCATTCCGAGAGAGCAAGTCTGATGATAGGCGGTTTTATATTTTTACTGCTACTAAGACTCTTCATTTGAGAACTGATTCAAAGAGGGATAGAGCAGTTTGGATGCAAGCTTTACACACCGCAAGAGGCCTATTTCCACCAAGAACGATAAATGATAACCTATCACACGTACCTGGTGCATTGTATGTATCAACAAAGATGCTTAAGGAGAGATTGCTTGAAGAGGGAATGAATGAGACTCTTGTAAAGGATTGTGAACAGATCATGCTTTCAGAATTCTCAGAAATTCGAGGTCAGCTTCAAGTTCTATGTGAGGAACGCTCTAATTTGATTGATACTATAAGGCAATTGGAGGCTGCCAACATTGAAGCTGAAGCAGGGGATATGCATGGTGGGGAATACCAATTGCCGAAGCATGATTTTTTGGCTGTGGAAGATCAAAAATATGGTGGTGTCGTTGTCAAATTAGAATGTAGCACCACTGAATCATCTGATGATATAGAGACAAAAGAGTTTGAGGATGTGTCGGATGAGGATGCAATGTCCTTTTATGACACAATGGAGAATTTTACAGAATCTAATGCTAGTTGTGGTTCTCTAAGAGCAGATTCATATTGCATAGATGTAAGCGGGGAATTCAAAAGTAAATATGATTATGTTAGGAAGATGAAAAATGAGAGCTACAATTCTGGGGGCTCATGCGATGAAAGACGCCAAAGACTTCCTAGTCCAGTTGAAAAGGAGAAACGAGTCAGTCTTTGGTCTATAATCAAAGATAATGTAGGAAAGGATCTCACACGGGTTTGTCTCCCTGTTTATTTTAACGAGCCAATGTCTTCCCTTCAGAAATGTTGTGAAGACTTGGAATATTCTTATCTTTTGGATCGAGCATATGAACATGGAAAAATGGGTAATAGTCTCCTGAGGGCTCTCAATGTAGCTGCATTTGCGGTTTCGGGTTATGCTTCCTCTGAGGGGCGTCACTGTAAACCTTTCAATCCCTTGCTGGGGGAAACTTACGAAGCTGACTACCCTGAGAATGGAATTCGCTTCTTCTCTGAGAAGGTAAGTCACCATCCAACCCTCATTGCTTGTCACTGTGAAGGTAGAGGATGGAAATTCTGGGGTGATAGCAATCTCCATTCAAAATTCTGGGGCAGGTCCATTCAGCTGGAACCAGTTGGAGTTCTAACTCTGGAGTTTGATGATGGAGAAATCTTTCAGTGGAGCAAGGTTACAACAAATATATACAATCTCATCCTTGGCAAAGTCTATTGTGATCATCATGGCATAATGCATATAAGCGGCAACAAACAACATTCATGCAAACTCACATTCAAAGAACAATCTATTCTAGACCGTAATCCTCACCAGGTTTGTAGTAAATGTGTCAATTGCTTTATAATTGGTCTCAAGTTTGAACAAATTCTACACTTTCAGGTTCATGGATATGTGGAAGATGTAATAGGGAAAAGGGTAGCCACACTAATAGGCAAATGGGATGACTGCATGTATTATGTCAATGGGGAAGGAGGGTTTTCGAAAGGCGGGTTTAATTTATGCGATGCCTCATTGTTGTGGAAAAGTCGTAAACCTCCACCAAATCTCACTCGTTATAACCTGTCTTCCTTTGCAATCACTCTAAACGAGCTAACAGAGGGACTGAAGGAAAAACTCCCACCCACAGATTCTAGGTTGCGACCAGACCAGCGACATTTAGAAAACGGTGAATATGATAAGGCAAACGAGGAAAAACAGCGATTGGAGAAGAGGCAAAGAATTTCGAGGAAACTGCAAGAAAATGGGTGGAGACCAAGGTGGTTCCAAAGAGAAAGAGAAGACGGACCATTCCGTTATGTGGGCGGATATTGGGAAGCTCGAGAAGCAGGGAAATGGGAAGATTGCCATGATATCTTTGGAGAATTGAACGAGGAGCTTGTGAACAATTAG 2373 42.86 MHPLCCLSIESSGGGGNFGDNLSEEAVLSKSRSLPASCAALSGRSNGNAGKLQPGSASTVAGILYKWTNYGKGWRSRWFLLRNGVLSYAKIRRPENLNILAPNNDIRLIGEVSTNRLSRLDAGGGRRKPQKSIGVAHLKIFSFRESKSDDRRFYIFTATKTLHLRTDSKRDRAVWMQALHTARGLFPPRTINDNLSHVPGALYVSTKMLKERLLEEGMNETLVKDCEQIMLSEFSEIRGQLQVLCEERSNLIDTIRQLEAANIEAEAGDMHGGEYQLPKHDFLAVEDQKYGGVVVKLECSTTESSDDIETKEFEDVSDEDAMSFYDTMENFTESNASCGSLRADSYCIDVSGEFKSKYDYVRKMKNESYNSGGSCDERRQRLPSPVEKEKRVSLWSIIKDNVGKDLTRVCLPVYFNEPMSSLQKCCEDLEYSYLLDRAYEHGKMGNSLLRALNVAAFAVSGYASSEGRHCKPFNPLLGETYEADYPENGIRFFSEKVSHHPTLIACHCEGRGWKFWGDSNLHSKFWGRSIQLEPVGVLTLEFDDGEIFQWSKVTTNIYNLILGKVYCDHHGIMHISGNKQHSCKLTFKEQSILDRNPHQVCSKCVNCFIIGLKFEQILHFQVHGYVEDVIGKRVATLIGKWDDCMYYVNGEGGFSKGGFNLCDASLLWKSRKPPPNLTRYNLSSFAITLNELTEGLKEKLPPTDSRLRPDQRHLENGEYDKANEEKQRLEKRQRISRKLQENGWRPRWFQREREDGPFRYVGGYWEAREAGKWEDCHDIFGELNEELVNN 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12096021 12101167 + BLOR11596 Blo03g00415 57879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00415 790 Pfam Oxysterol-binding protein 393 769 IPR000648 GO:0008289
Blo03g00415 790 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 601 IPR000648 GO:0008289
Blo03g00415 790 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 620 784 IPR000648 GO:0008289
Blo03g00415 790 Pfam Pleckstrin homology domain 62 181 - -
Blo03g00415 790 SUPERFAMILY Oxysterol-binding protein-like 388 785 IPR037239 -
Blo03g00415 790 Gene3D - 711 785 - -
Blo03g00415 790 SUPERFAMILY PH domain-like 56 183 - -
Blo03g00415 790 Coils Coil 712 742 - -
Blo03g00415 790 SMART PH_update 58 186 IPR001849 -
Blo03g00415 790 ProSiteProfiles PH domain profile. 57 184 IPR001849 -
Blo03g00415 790 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 2 601 - -
Blo03g00415 790 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 620 784 - -
Blo03g00415 790 Coils Coil 241 261 - -
Blo03g00415 790 Gene3D - 479 666 - -
Blo03g00415 790 Gene3D - 55 184 IPR011993 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00415 K20456 OSBP; oxysterol-binding protein 1 - tcc:18606296 1124.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00415 Blo-Chr3:12096021 Blo18g00195 Blo-Chr18:1896298 0 dispersed
Blo19g00281 Blo-Chr19:17096912 Blo03g00415 Blo-Chr3:12096021 0 transposed
Blo02g01049 Blo-Chr2:40471130 Blo03g00415 Blo-Chr3:12096021 0 wgd
Blo03g00169 Blo-Chr3:4269721 Blo03g00415 Blo-Chr3:12096021 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g512 . . . Bda08g00569 . . Bma07g01601 Bma14g00510 . . . . Car02g01309 . . . . Bhi11g00211 Tan01g2012 . . . . . . . . . . . . . . . . . Csa05g00404 Chy09g01108 . Blo03g00415 . Bda07g00005 Bda09g00095 Bpe08g01434 Bpe11g00265 . . . . . . . . . . Cpe13g00226 Bhi12g00422 . . . . . . Cla01g00377 Cam01g0396 Cec01g0388 Cco01g0408 Clacu01g0397 Cmu01g0378 Cre09g2134 Lsi09g00408 . Chy06g02027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00415 Blo_Chr03 FPKM 0.872265 0.68735 15.384757 15.318537 4.571058 3.082721 5.386552 4.921965 3.071841 3.794071