Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00479 ATGTTCGCTTCAATTGTTGCTCCTCGTCCGCATGGAATCGGATGGCGAACAGAGAGAATCCAATCTGAGCACTGTCATGTGGCAACAGGTACGAGGGTGTCGAAACCTTCTGATTTTGTGACTATGGATTCGGAAAATGAGTTTTCGGCACTGGAGTCTGTCGAGGACAGCGAAGCCATCTCCCCAAAGATGGTAGTCCAAAGGGATCATAATGGAATGTTGAATAATGGATTTTATGCCAATAACAGTGAGGTTTCTGTCGGAAATGTTCATGATCGTGAAATATTGCAAGAAGATACCAAAGGAGAAGATGATGGGACTGGCAAGCTGTGTTCTCCCACTCTTTCTGCCACACCTGATGGGGGTTCACCTTCTAATCGGAAAGGATTAGGGTTAAAGAAATGGAGACGAATTAGGAGAGATCATGTTAAGGATGTAAGCCCCTTTGCAGATTCTAGTAAAATGTTGAAGCGCGGTTTGGCCACTTCTACTAACAACCAATCTAAACCTCAATTTTCTTCTCCAGACATGAAGCAACAGAGCGAAGGTTCCATTGGATCTGAAAATACGCAAAGGAATTTTGGAATTACCCATAGTTTGGTAGTCCCAATTTCAATTCCGGATTCTAGGTTTGCAGTTGGGTCTGGAATTGCTGGCGATTCTGACAGTGAGGACAGGGGCAGCAAGTTCTCCACAGCAGCTAGTGGACCAAAGACGAGGCAGCCACGGCCTGTGCGAGAAAAGAGCAGGATAATGAACACGGCTGCGAGAAGTTCAGGTTCTTTGGCTCAGCATTTCCAGCCAGGAAAGGGGCGTAGTGAAGGCAGTAAAAAGCTTAGAGGGGAAAAGGTTAAAATTGAAGAGGAAAACTCTCTCTCCAGCTTGGAGTCCGACTCAGTAAACTCTAACTTTGTCTTTGCCCCTGGTCCCTTTACGGTCAGTGATGATGGAAAACATGGTGGAAGGGCTGGGGATTTTGGCGGAGCGAATGGTGATGGAGCTCATAAATTAGAAAAGCAGTACACTGAGGAAGCTGAAAGAGGAACTGGGAAAGTGGTTGAGGGAGAAAATGATGGTGCTGCAGAAAAAAATCCAGAATCAAGGGATGAAGATTGTCTGGCAGATTCTATGTTGAGCCTCCAATCTGTGCAGGAAGCTCTTGGAAGAGAAGTTCAGAAATTGGGAACAATTGGTAGGGAGGCTACTCCATGTGACGGTTCAGTCAATGATCTGATTTCAGCAGACCACTTGGATTCTCAGAGTCCAAGACAGAGTAGGTTAGAAACACAAGTACTAGAGATGGCAGAGAATGAAAGAGTTTTGGGAAAAAAATTGGAGGAGTCTACGGCCATGATCAAAGCAAAGGAGCTTCATATTACTCAACTCCAGGCAGAGATTAGCCGTAGTAGTGGCGATGGCACACTGGATGACATTTTGAAGCTAAAGATGGAAGCAGAAGTAGAATGTTTGGTATTGACGAGAACAACGCAGACAATGAAAGATGCCGTTAGTGGTCAGGCGAAACTTTTTGAAGAGCAGAAGGCTTTGGTCGAGGGGCAGGTGGGGATGATACACAAGCTCAGAGAAATGGAAAGCAAAGCGATAATGCTGGAGGAAAAATTGAAACAGGTGGAGCAGAATGAAGATGCTGAGAAGATGCGTAGGAGAGTTAGTAAGGTAAGTTTGTGTTTTGGCGCTGCAATGGTACTTTTACTCTTGGTGTGGTGGGCTTTTGTGTGGGAGTTTTTGTCTGAGGCTGAGGTGATTGTACCCACATAG 1779 45.47 MFASIVAPRPHGIGWRTERIQSEHCHVATGTRVSKPSDFVTMDSENEFSALESVEDSEAISPKMVVQRDHNGMLNNGFYANNSEVSVGNVHDREILQEDTKGEDDGTGKLCSPTLSATPDGGSPSNRKGLGLKKWRRIRRDHVKDVSPFADSSKMLKRGLATSTNNQSKPQFSSPDMKQQSEGSIGSENTQRNFGITHSLVVPISIPDSRFAVGSGIAGDSDSEDRGSKFSTAASGPKTRQPRPVREKSRIMNTAARSSGSLAQHFQPGKGRSEGSKKLRGEKVKIEEENSLSSLESDSVNSNFVFAPGPFTVSDDGKHGGRAGDFGGANGDGAHKLEKQYTEEAERGTGKVVEGENDGAAEKNPESRDEDCLADSMLSLQSVQEALGREVQKLGTIGREATPCDGSVNDLISADHLDSQSPRQSRLETQVLEMAENERVLGKKLEESTAMIKAKELHITQLQAEISRSSGDGTLDDILKLKMEAEVECLVLTRTTQTMKDAVSGQAKLFEEQKALVEGQVGMIHKLREMESKAIMLEEKLKQVEQNEDAEKMRRRVSKVSLCFGAAMVLLLLVWWAFVWEFLSEAEVIVPT 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16580906 16584755 + BLOR11660 Blo03g00479 57943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00479 592 Coils Coil 445 465 - -
Blo03g00479 592 Coils Coil 527 554 - -
Blo03g00479 592 MobiDBLite consensus disorder prediction 271 292 - -
Blo03g00479 592 MobiDBLite consensus disorder prediction 216 294 - -
Blo03g00479 592 PANTHER WPP DOMAIN-INTERACTING PROTEIN 2 92 592 - -
Blo03g00479 592 PANTHER WPP DOMAIN-INTERACTING PROTEIN 2 92 592 IPR044696 -
Blo03g00479 592 MobiDBLite consensus disorder prediction 314 370 - -
Blo03g00479 592 MobiDBLite consensus disorder prediction 252 266 - -
Blo03g00479 592 MobiDBLite consensus disorder prediction 336 370 - -
Blo03g00479 592 MobiDBLite consensus disorder prediction 159 191 - -
Blo03g00479 592 MobiDBLite consensus disorder prediction 99 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00479 - - - rcu:8267927 346.665
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g00479 Blo03g01494 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00479 Blo-Chr3:16580906 Blo03g01494 Blo-Chr3:41781624 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g787 Blo03g00479 Blo03g01494 Bda07g00438 Bda09g00453 . Bpe08g01074 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1273 Cone15ag1299 . Csa03g00380 . . . . . . Bpe11g00614 . Bma07g01232 Bma14g00656 . . . . Cma16g00998 . Car16g00955 Cpe14g00821 . . . . . . . . . . . . . . . . . Chy06g01934 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004840 2 1 2 3 2 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00479 Blo_Chr03 FPKM 10.962399 11.323096 7.278888 7.923866 19.769165 19.76045 21.534468 28.793779 26.780619 28.204239