Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00480 ATGTCCCATTATCAAGGGGATAATTCTGATTACATGGCTGATGAGTATGAAATGGAATTCGGAGATGATGATATGGATGCCGAGTTTCATGAAATAGATATGGATGGGTCAGAGTCTGATATCGATGATTTTGACTCGAGTAGCAGAGTACCTGATACCACTTCGGCTCAAGCAAGAAGAGGAAAAGATATCCAGGGAATACCTTGGGACAGGCTAAGTATTACTAGGAAAAAGTACCGGCAGACTAGGCTAGAGCAGTACAAGAACTACGAGAATGTTCCTAATTCTGGAGATGGGTCAGGGAAGGACTGCATTAATACAAAGAAAGACTGTACGTATTATGAGTTTCGGCGAAACTCAAGATCCGTGAAATCAACCATTCTTCACTTTCAGTTAAGGAACTTGGTATGGTCTACATCAAAACATGACGTTTACCTCATGTCACATTTTTCAGTGATTCATTGGTCTTCTCTAACTTGCACTAAGTCTGAAGTTCTCAATGTTTCGGGACACGTGGCACCAACTGAGAAACATCCTGGAAATCTATTGGAAGGATTTACCCAAACCCAAGTCAGTACTCTTGCTGTAAAAGATAAGCTATTAGTTGGTGGAGGATTCCAGGGAGAGCTGATTTGCAAGCGATTAGATAGACAAGGCGTTAGCTTCTGTTCCAGGACAACTTACGATGATAATGCCATCACCAATGCTATTGAAATTTACGATAGTTTGAGTGGTGCAGTTCACTTCACAGCCTCAAATAATGATTGTGGAGTTAGAGACTTTGATATGGAGAAGTTTCAGCTCACTAAGCATTTCAGTTTTCCTTGGCCTGTGAATCACACTTCTCTCAGTCCAGATGGTAAACTAATTGTGATTGTGGGAGACAACCCAGATGGTTTATTGGTGGACTCCCAAACTGGAAAGACGTTGACGCCTTTATGTGGGCACTTAGACTTTTCATTTGCATCGGCCTGGCATCCCAACGGTGTCACCTTTGCCACAGGAAACCAAGACAAAACCTGCCGGATTTGGGATGTAAGAAACCCATCCAAGTCAGTTGCTGCTCTGAAGGGAAACCTTGGAGCTACACGATCGATAAGGTATAGTTCTGACGGTAAATATATGGCGATGGCTGAGCCTGCAGACTTTGTGCATGTGTATGATGTCAGCAAGGGGTATGGAAGAGAGCAAGAAATTGATTTTTTTGGCGAGATTTCGGGCATATCTTTCAGTCCCGACACCGAATCGCTTTTTATTGGTGTGTGGGATCGTACTTATGGTAGCCTCCTCGAGCTCTACAGTGGAGCATACACTACTTTTCACCACCATTTTGGTAGGCCTCCACCCTTTTGGGAGATAGACAACACCCTTTTGGCAGTGCTCCGTTAG 1389 43.56 MSHYQGDNSDYMADEYEMEFGDDDMDAEFHEIDMDGSESDIDDFDSSSRVPDTTSAQARRGKDIQGIPWDRLSITRKKYRQTRLEQYKNYENVPNSGDGSGKDCINTKKDCTYYEFRRNSRSVKSTILHFQLRNLVWSTSKHDVYLMSHFSVIHWSSLTCTKSEVLNVSGHVAPTEKHPGNLLEGFTQTQVSTLAVKDKLLVGGGFQGELICKRLDRQGVSFCSRTTYDDNAITNAIEIYDSLSGAVHFTASNNDCGVRDFDMEKFQLTKHFSFPWPVNHTSLSPDGKLIVIVGDNPDGLLVDSQTGKTLTPLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDVRNPSKSVAALKGNLGATRSIRYSSDGKYMAMAEPADFVHVYDVSKGYGREQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLELYSGAYTTFHHHFGRPPPFWEIDNTLLAVLR 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16697226 16703553 - BLOR11661 Blo03g00480 57944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00480 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 354 IPR001680 GO:0005515
Blo03g00480 462 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 348 - -
Blo03g00480 462 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 433 - -
Blo03g00480 462 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 1 433 - -
Blo03g00480 462 MobiDBLite consensus disorder prediction 30 60 - -
Blo03g00480 462 SMART WD40_4 306 345 IPR001680 GO:0005515
Blo03g00480 462 SMART WD40_4 349 388 IPR001680 GO:0005515
Blo03g00480 462 Pfam WD domain, G-beta repeat 308 345 IPR001680 GO:0005515
Blo03g00480 462 Gene3D - 228 448 IPR015943 GO:0005515
Blo03g00480 462 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 190 425 IPR011047 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00480 - - - jre:108985970 754.592
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g00480 Blo03g01493 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00418 Blo-Chr2:5485857 Blo03g00480 Blo-Chr3:16697226 0 dispersed
Blo03g00480 Blo-Chr3:16697226 Blo12g00149 Blo-Chr12:10357868 0 dispersed
Blo03g00480 Blo-Chr3:16697226 Blo03g01493 Blo-Chr3:41778073 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g783 Blo03g00480 Blo03g01493 Bda07g00435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1270 Cone15ag1296 . . . . . . . . Bpe11g00613 . . Bma14g00658 . . Cmo09g00636 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000780 3 4 6 6 3 2 3 2 2 2 2 2 3 2 2 2 2 4 3 2 2 2 2 2 3 2 1 11 7 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00480 Blo_Chr03 FPKM 0.843915 2.99146 31.483994 31.294094 17.236212 14.198277 14.87044 0.276776 0.629216 0.337349