Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00483 ATGGCATCCGCAAGTACGCAGATTTCAGCAACGGCTAGTTTTCAACGGTCGGCTGCGAACGATCCTAAAGGTGTTGAGGACGTCTGCACTGTGCAAGTCTATAAAGGGAATATTTGGGTTGGTCCAAGGTCTTCCCTTTTTTTTGACTCTTCCAGTGTTACTTTTCCCATAACACCTCTTGATGGCGTCCTGTTACCGACAAGCCTTCTTAACCAAATTCTAGAATATCAGGCCAGCATTTCATTTGTGGGTCTAAAGAATTTGTCTAGACTGTCTTTGAAAGATGGATTTCAAGGTACAATTTGTTGGCTTGCGCCAGAGAGCGTAAAGACTGTTGTTTTCTCAAATAAACTAAACTTCCTTATCCCTTTCGGCCCTCTTGCAATCCTTGTTGACAAATTCACTGGTCATCATGGCTGGGTGTTCTTTTTTAGCTTGTTAGGTATAGTGCCTCTGGCTGAGCGCCTGGGTTATTCTACAGAGCAGCTGGCCTTTTATACGGGAGCTACTGTTGGGGGGCTCTTAAATGCTAGCTTTGGAAATGCAACAGAGCTGATTATATCTATTTACGCTCTCAAGAGTGGAATGATTCGGGTTGTGCAGCTGTCTTTACTGGGCTCAATTCTTTCCAATATGTTGTTAGTGCTTGGATATGCGTTCTTCAGTGGCGGACTCGTTCATCGTAAAAAGGAACAGACTTTTAGCAAGTCAACTGCGGTTGTCAACTCGGGATTGCTTTTAATGGCAGTCATGGGCCTTCTCTTTCCTGCAGTTCTGTATTACACCCGCAGTGAAGCTCATTTTGGGACCTCAGAGTTGGCTCTCTCTAGATTTACCAGTTGCATTATGCTCGTCGCCTATGCTGCATTTCTTTTTTTCCAGTTAAGGAGTCAAAAAAATCTTTATGCCATTCCAGATGAGGTGGGTGTTGGTGTGGATGCGGAAGATGATGATGCGGCCTCGAAGATCTCTAAATGGGAGTCCATTATCTGGCTTTTCATCATGACAGCTTGGATTTCTATTCTATCTGAGTATTTAGTTCGTGCCATAGAGGGGGCATCAATATCATTCGGAATTCCAATCACATTTATTAGTGTTATATTGCTACCAATTGTGGGAAATGCAGCTGAGCATGCTAGTGCAATTTTGTTTGCTATGAAAGACAAGCTTGATATATCTTTAGGAGTGGCAATTGGTTCATCAACGCAGATTTCTATGTTTGGACTTCCATTCTCAGTCGTGTTTGGGTGGATGATGGGACAACCCATGGACTTAAACTTCAAACTTTTCGAGACGGCTACTCTTTTTAAAACCGTCATAGTGGTTGCCTTCTTGCTACAGGTAGCTATTCTTTTCTGCTCCATCATCACGAACATCGCTGGCTTATCTTCGATGAACGGCATTTTACCCGTTTTGGTTTCTGATCAGCCTTTCAATTTCTTGTTTATAGGGAGGAACGTCTAA 1464 43.1 MASASTQISATASFQRSAANDPKGVEDVCTVQVYKGNIWVGPRSSLFFDSSSVTFPITPLDGVLLPTSLLNQILEYQASISFVGLKNLSRLSLKDGFQGTICWLAPESVKTVVFSNKLNFLIPFGPLAILVDKFTGHHGWVFFFSLLGIVPLAERLGYSTEQLAFYTGATVGGLLNASFGNATELIISIYALKSGMIRVVQLSLLGSILSNMLLVLGYAFFSGGLVHRKKEQTFSKSTAVVNSGLLLMAVMGLLFPAVLYYTRSEAHFGTSELALSRFTSCIMLVAYAAFLFFQLRSQKNLYAIPDEVGVGVDAEDDDAASKISKWESIIWLFIMTAWISILSEYLVRAIEGASISFGIPITFISVILLPIVGNAAEHASAILFAMKDKLDISLGVAIGSSTQISMFGLPFSVVFGWMMGQPMDLNFKLFETATLFKTVIVVAFLLQVAILFCSIITNIAGLSSMNGILPVLVSDQPFNFLFIGRNV 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16996489 17002017 - BLOR11664 Blo03g00483 57947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00483 487 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 107 447 IPR004713 GO:0006812|GO:0008324|GO:0016021
Blo03g00483 487 TIGRFAM caca2: calcium/proton exchanger 109 447 - -
Blo03g00483 487 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 107 447 - -
Blo03g00483 487 TIGRFAM cax: calcium/proton exchanger 121 445 IPR004798 GO:0006816|GO:0015369
Blo03g00483 487 Pfam Sodium/calcium exchanger protein 329 449 IPR004837 GO:0016021|GO:0055085
Blo03g00483 487 Pfam Sodium/calcium exchanger protein 140 295 IPR004837 GO:0016021|GO:0055085
Blo03g00483 487 Gene3D - 317 473 IPR044880 -
Blo03g00483 487 Gene3D - 167 314 IPR044880 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00483 Blo-Chr3:16996489 Blo05g00015 Blo-Chr5:147481 9.26E-171 dispersed
Blo03g00483 Blo-Chr3:16996489 Blo15g00403 Blo-Chr15:5754119 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00483 K07300 - mnt:21406517 541.576