Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00497 ATGAATTCTCCGGCGGGAATCCAAATCCAGCATCCTCATTCCGTTTCTTCCTTCTGGGTTAGAATGGCAACCAGAATGTCTAGAGCTAGATGGTTCATTTTCTTAAGAAAAGTATTTCACTACCAGAACAATTCGAGATCCGATTTGGGTTCTAATCCTTTAAATTCCAGCACTTGGATGATGATGGAGCTCATTGCTTTGGTAGTTCAGATAAGTTTGATAATATTTACTCTCAATATATCTAAGAGTGAGAAGCCAGTTTGGCCTATGAGAGTATGGGTTACTGGTTATGGAATTGGCTGCTTCCTCAGTTTGCTCTTGCTCTTCAGTCGATATCGGCTTCTTTGTCTGAATCTTTCTGATGTGGAGCAGGAGAACAGAGACAGTGAAGAATCAAGGACCTCGCATTTGAGAAACAAATGCCAGACATCTCTCGAGCTTTTCTTTGCAATATGGTTTGTCATCGGCAATGTTTGGATCTTCGACTCTCGCTTCGGTTCCTACGACCAAGCCACAAAGCTCCACTTCCTCTGCATATCACTCTTATCATGGAATGCCATTTGCTACTCCTTTCCGTTCTTCCTTTTCCTTCTGCTCTGCTGCTTTGTGCCATTGGTCAGCTGCTTTTTAGGCTACAACATGAATGTGGGTTCGGCCAATCGAGGAGCCTCCGACGAACAGCTATCTCAGCTCCCTAGCTGGAGATATAAACCGGTTTTAGTCGACTTAGAGCTCGAAATGGACTTGGAAAGCAATTCCACCCTAGCAACCAAAGAAGATCTGGAATGCTGTATTTGTCTTGCAAAGTATATTGAGAAGGAGGAAATGAGGGAGTTGCCTTGCTCACATATGTTTCATCTCAACTGTGTTGATCAATGGCTGAGAATCATCCCCTGTTGCCCACTTTGCAAACAAGAGCTAGACAGTAGTATGTGA 936 43.59 MNSPAGIQIQHPHSVSSFWVRMATRMSRARWFIFLRKVFHYQNNSRSDLGSNPLNSSTWMMMELIALVVQISLIIFTLNISKSEKPVWPMRVWVTGYGIGCFLSLLLLFSRYRLLCLNLSDVEQENRDSEESRTSHLRNKCQTSLELFFAIWFVIGNVWIFDSRFGSYDQATKLHFLCISLLSWNAICYSFPFFLFLLLCCFVPLVSCFLGYNMNVGSANRGASDEQLSQLPSWRYKPVLVDLELEMDLESNSTLATKEDLECCICLAKYIEKEEMRELPCSHMFHLNCVDQWLRIIPCCPLCKQELDSSM 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18086362 18087998 - BLOR11678 Blo03g00497 57961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00497 311 Pfam Ring finger domain 262 304 IPR001841 -
Blo03g00497 311 SUPERFAMILY RING/U-box 255 308 - -
Blo03g00497 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 310 IPR013083 -
Blo03g00497 311 ProSiteProfiles Zinc finger RING-type profile. 263 304 IPR001841 -
Blo03g00497 311 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 13 308 - -
Blo03g00497 311 SMART ring_2 263 303 IPR001841 -
Blo03g00497 311 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 308 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00497 Blo-Chr3:18086362 Blo06g00675 Blo-Chr6:29871000 1.04E-48 dispersed
Blo03g00497 Blo-Chr3:18086362 Blo18g00046 Blo-Chr18:306739 1.44E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00497 - - twl:119986263 417.927