Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00505 ATGGGCGGGATACGTCTATCACTGGAAGAAACCCTGAAGGGGGGATACGCCAGAAGGGAAGAAACCTTGAAGGCGGGATACGCCAGAAATGTGTCTGCGGTACGATTAATGAGAATAGAGCTTGGTGGCGCTTTTGCTGACCTTCTTAACGAGAAAGGGAAAGGCTCTGGTGATAATGAGATGGGATACATTGAACGAACTCTTGGCTTTCGTACACGTGATTTAGAAGATCGTGATCTTAGATTGGTAACAGATATTGTTGGCGGAACAATTCGTTGGAAGAGATATTTGGACTATTTGATTACTTCTCTATGCCATGATGAGAATACTTTTAAGGGCATGGAACCTCTTCTCATTCAGATCCTCCGAATCGGTTTCTATGAGATTCTCAAGCTAGATATGCCCCCATATGCTGTTGTAGATGAGAATGTAAAGCTTGCTAAGGTAGCCCTTAGACCTGGTGCTGGAAACTTGGTCAATGGAATGCTTCGAAAGCTTCTTTTGCTTAAGGAAAAAAACTCTCTTCCTCTACTTAAAGTGGAAGGTGATGGTCGAGCAAAAGCACGAGCTCTTGCAACTTTGCATTCCCATCCTGTTTGGATGGTTAGGCGATGGACAAAGTATCATGGGCAAGAAGAAGCTATTAGATTGATGAAGTGGAATAACAGTGAACCGAGTTATAGCTTGAGGGCAAACAGTGGGAATGGTGTTTCAAGAGCTGATCTTGTTACAAGACTCAGTTTGTTAAAGGTCCCTCATGAGATTTCTTTGCATTTGGATGATTTTGTTCGAATCAAAACTGGATTGCAGGTAATCATAAAAGCAGGCTTACTTAAAGAAGGGTTGTGTTCAGTGCAAGATGAGAGTGCCGGTCTTGTAGTTTCTGTTTTAAATCCTCAGCCTGGGGAGAGCATTATTGATTGTTGTGCTGCTCCAGGAGGAAAAACACTCTGCATAGCTTCCCAATTAAAAGGCCAAGGTAGTAAATTATATGCCATTGACATCAATAAAGGTCGTTTACGTATTCTTAAAGAGACGGTAGAATTACACAAATTAGATGGGATTATCACTACCATTCACAGCGATCTTCGACGATTTTCTGAAAAACATCCTGTGAAGTGTGATAAAGTTCTGTTGGATGCTCCTTGCTCTGGATTAGGGGTTCTATCCAAGAGAGCTGACCTGCGTTGGAATAGGAAACTAGAGGACGTGGAGGAGCTTAAGAATTTACAGGATGAGCTACTTGATGCAGCTTCCATATTAGTAAAGGAGGGTGGAGTTTTGGTCTATAGTACCTGCTCAATAGATCCTGAAGAGAATGAAGAGAGGGTTGCTGCATTTCTTTCAAGGCACCCAGTATGTAAGAGATCAAGGATAGCAGCAGTTGATGAGGCATTTGTACGTTGCGGGCTTAGCGACTGGATTTTTGAAGAGAAGGAGACGAAAGGGAAAGAGACCGAGAGAAACAAGGAGAGGGAGATCGAGAGAGAAGAGAAGACGATGGCGAGTAGAAGGACGAGGCGAGAAGGAGACATCACTGCGGGCTCGGGTGCGCGCTGTCCGTTGTACTGGCTACTGGCGACGCCTGCAGGCAACGCAACGAACGGAAATCGTGGGGCTAGGCGGCGTTTTGGCGTCGGCAGAGGCGATTCAGCAGGGTTGAATTGGCTGGCTGGAGTAGGGCATCAGTCCTGGTTGATTAAGTTTATCCTTTTGATAGCCTTGTTGATAGTTGCATCTGTTAGGGTTGGATTTGCCTTGAAGAAACATTGTTAG 1776 44.65 MGGIRLSLEETLKGGYARREETLKAGYARNVSAVRLMRIELGGAFADLLNEKGKGSGDNEMGYIERTLGFRTRDLEDRDLRLVTDIVGGTIRWKRYLDYLITSLCHDENTFKGMEPLLIQILRIGFYEILKLDMPPYAVVDENVKLAKVALRPGAGNLVNGMLRKLLLLKEKNSLPLLKVEGDGRAKARALATLHSHPVWMVRRWTKYHGQEEAIRLMKWNNSEPSYSLRANSGNGVSRADLVTRLSLLKVPHEISLHLDDFVRIKTGLQVIIKAGLLKEGLCSVQDESAGLVVSVLNPQPGESIIDCCAAPGGKTLCIASQLKGQGSKLYAIDINKGRLRILKETVELHKLDGIITTIHSDLRRFSEKHPVKCDKVLLDAPCSGLGVLSKRADLRWNRKLEDVEELKNLQDELLDAASILVKEGGVLVYSTCSIDPEENEERVAAFLSRHPVCKRSRIAAVDEAFVRCGLSDWIFEEKETKGKETERNKEREIEREEKTMASRRTRREGDITAGSGARCPLYWLLATPAGNATNGNRGARRRFGVGRGDSAGLNWLAGVGHQSWLIKFILLIALLIVASVRVGFALKKHC 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18793170 18809144 - BLOR11686 Blo03g00505 57969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00505 591 CDD AdoMet_MTases 305 431 - -
Blo03g00505 591 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 20 452 IPR023267 GO:0001510
Blo03g00505 591 MobiDBLite consensus disorder prediction 485 510 - -
Blo03g00505 591 Pfam NusB family 63 166 IPR006027 GO:0003723|GO:0006355
Blo03g00505 591 Gene3D Vaccinia Virus protein VP39 291 514 IPR029063 -
Blo03g00505 591 Pfam 16S rRNA methyltransferase RsmB/F 295 463 IPR001678 GO:0008168
Blo03g00505 591 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 217 508 IPR001678 GO:0008168
Blo03g00505 591 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 189 471 IPR029063 -
Blo03g00505 591 PRINTS Viridiplantae FMU-related RCMT signature 58 74 IPR023268 -
Blo03g00505 591 PRINTS Viridiplantae FMU-related RCMT signature 34 57 IPR023268 -
Blo03g00505 591 PRINTS Viridiplantae FMU-related RCMT signature 174 187 IPR023268 -
Blo03g00505 591 SUPERFAMILY NusB-like 64 201 IPR035926 -
Blo03g00505 591 Gene3D - 39 176 IPR035926 -
Blo03g00505 591 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 20 452 - -
Blo03g00505 591 Gene3D Sun protein; domain 3 185 290 - -
Blo03g00505 591 PRINTS RNA (C5-cytosine) methyltransferase signature 306 316 IPR023267 GO:0001510
Blo03g00505 591 PRINTS RNA (C5-cytosine) methyltransferase signature 277 291 IPR023267 GO:0001510
Blo03g00505 591 PRINTS RNA (C5-cytosine) methyltransferase signature 425 441 IPR023267 GO:0001510
Blo03g00505 591 PRINTS RNA (C5-cytosine) methyltransferase signature 375 387 IPR023267 GO:0001510
Blo03g00505 591 TIGRFAM rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 71 452 IPR004573 GO:0006364|GO:0008649
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00505 K03500 rsmB, sun; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] - qsu:111986553 697.967
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00505 Blo-Chr3:18793170 Blo03g01102 Blo-Chr3:37480364 8.44E-23 dispersed
Blo03g00505 Blo-Chr3:18793170 Blo01g01455 Blo-Chr1:53633051 2.83E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g678 Blo03g00505 . Bda07g00413 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0007 . . . . Csa07g00858 . . . . . . Bpe11g00590 . . Bma14g00679 . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01039 Cme01g01121
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016633 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00505 Blo_Chr03 FPKM 14.795082 14.039607 6.359138 7.780002 4.17911 4.006186 3.768808 17.050463 17.415756 18.113922