Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00534 ATGTGTAGCTCACGGTGTTTTCTTGTCCTACTTGCTCTGCTTCTGCATTTATCTGTTGCTTTAGTTTCTGCTCAGCGATCTAATGGCACCAGTACCTGGCAGTCTCTCAGCGGAAATGCTCCTTTAGTTATTGCACGTGGTGGATTCTCGGGCCTATTTCCTGATTCTAGTATATTTGCCTACACTTTGGCTGTAGCAATCAGCGTACCTAATGTGGTCTTATGGTGTGATGTGCAATTAACAAAGGATGGGGCTGGAATTTGTCTTCCAAATTTGAAACTAGATAATTCAACTGATATATCGGTCGTTTATAGTACATCAGAAAATCAGTACCTAGTGAATGGGGTTAATACTACGGGATGGTTTTCTATCGATTTCACTCTCGATGACCTTGCAAATGTTTCCGATTGTTTTGCTCATCTGGGAGATGCTGACAAAAAACAAGCAAAACCGTTGGTTATTTCAAAGTTTGGAGCAAGTGGAGACTACCCCGGCTGTACTGACTTGGCCTATTCCAAAGCTATTTCAGTTGGTGTTGAAATACTTGACTGTCCTGTTCAAATAGCTAAGGATGGGACGCCATTTTGCTTAAGTTCTATAAATCTTATAGATAGTACTACTATTGCGCAAACCAGTTATAGCAACCTTTCAAAAACAATTCCAGAGATTATGACTGGTAGTGGAATTTACGCTTTTGATCTTACATGGCCTCAGATTAGCGATTTGACTCGAAATCGATGTTTAAATTTGGGCAATAATACTCCAGTCTACATGACCCCGGTCCAGCCTGGTAGTCTGTATAAACTCATCACCCCTGCCTACTTACCTCCAGCAGCAGCTCCAAGTCCAGTCCTGAAAGTGTCAGATGTGGATGAGCCGCCATTGCCTTCAATCTCTGAAGCGGTAACTCCGGCCCCGTCTTCCCCAACCGGGTTGGGAGCCACCCCACCCTCCCGAAGTGGCCAACCCAGGCTCACGTCCATCTTCTTCATCCATGGCCTTGGACTTGTGCTAGCCGCCCTTGTTTCTCTTTGA 1035 44.64 MCSSRCFLVLLALLLHLSVALVSAQRSNGTSTWQSLSGNAPLVIARGGFSGLFPDSSIFAYTLAVAISVPNVVLWCDVQLTKDGAGICLPNLKLDNSTDISVVYSTSENQYLVNGVNTTGWFSIDFTLDDLANVSDCFAHLGDADKKQAKPLVISKFGASGDYPGCTDLAYSKAISVGVEILDCPVQIAKDGTPFCLSSINLIDSTTIAQTSYSNLSKTIPEIMTGSGIYAFDLTWPQISDLTRNRCLNLGNNTPVYMTPVQPGSLYKLITPAYLPPAAAPSPVLKVSDVDEPPLPSISEAVTPAPSSPTGLGATPPSRSGQPRLTSIFFIHGLGLVLAALVSL 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20369706 20374779 - BLOR11715 Blo03g00534 57998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00534 344 Pfam Glycerophosphoryl diester phosphodiesterase family 158 249 IPR030395 GO:0006629|GO:0008081
Blo03g00534 344 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 243 340 - -
Blo03g00534 344 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 136 243 - -
Blo03g00534 344 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 12 135 - -
Blo03g00534 344 Gene3D Phosphatidylinositol (PI) phosphodiesterase 136 253 IPR017946 GO:0006629|GO:0008081
Blo03g00534 344 Gene3D Phosphatidylinositol (PI) phosphodiesterase 30 135 IPR017946 GO:0006629|GO:0008081
Blo03g00534 344 ProSiteProfiles GP-PDE domain profile. 151 344 IPR030395 GO:0006629|GO:0008081
Blo03g00534 344 MobiDBLite consensus disorder prediction 296 320 - -
Blo03g00534 344 SUPERFAMILY PLC-like phosphodiesterases 150 245 IPR017946 GO:0006629|GO:0008081
Blo03g00534 344 ProSiteProfiles GP-PDE domain profile. 41 150 IPR030395 GO:0006629|GO:0008081
Blo03g00534 344 MobiDBLite consensus disorder prediction 301 320 - -
Blo03g00534 344 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 243 340 - -
Blo03g00534 344 SUPERFAMILY PLC-like phosphodiesterases 39 134 IPR017946 GO:0006629|GO:0008081
Blo03g00534 344 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 136 243 - -
Blo03g00534 344 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 12 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00534 - - - vvi:100246982 176.792
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g00534 Blo10g00857 CCT
Blo03g00534 Blo03g01464 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00534 Blo-Chr3:20369706 Blo03g01464 Blo-Chr3:41264535 5.38E-31 dispersed
Blo03g00534 Blo-Chr3:20369706 Blo03g01463 Blo-Chr3:41256487 5.90E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g595 Blo03g00534 Blo03g01464 Bda07g00389 Bda09g00415 . Bpe08g01107 . Bma13g01101 . . Cma01g01100 Cma09g00980 Car01g00972 Car09g00891 Sed07g2717 Cpe06g00790 Cpe02g00801 Bhi09g01720 Tan01g3146 Cmetu01g1383 . Hepe01g1234 Mch11g1232 . . . . . . . . Cone6ag0036 Cone9ag0039 Cone14ag1192 Cone15ag1212 Lsi02g01864 Csa07g00986 . . . Blo10g00857 . Bda12g00943 Bpe11g00565 . Bma07g01273 Bma14g00315 . Cmo01g01146 Cmo09g00981 . . . . . . . . . . . . . Cla09g02041 Cam09g2130 Cec09g2195 . . . . . . Chy01g01075 Cme01g00976
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003436 3 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 1 1 2 1 1 2 1 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00534 Blo_Chr03 FPKM 3.256039 5.383985 10.280392 7.329643 1.573316 3.046032 1.655098 0.229978 0.766003 0.522908