Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00538 ATGGCATCCTCTTCGGATTCATGGGTAAAGGAATATAACGAAGCAGTTAAACTTGCTGATGATATCAATGGCATGATCTCTGAGCGAAGTTCGGTTTCTGTATCCGGACCAGAAGCACAGCGCTATGCCTCCGCTATTCGCAGAAAGATCACAATATTGGGGACTAGACTTGATAGCTTACTAGCACTCTTATCTAAACTTCCTGGAAAGCAGCCCATCTCTGATAAAGAGATGAATCGCCGACGGGACATGGTTACAAATTTAAGAACAAAGGTTACCCAAATGGCTTCACAACTGAACATGTCGAACTTTGCCAATCGTGACAGCTTGCTTGGTCCAGAAATTAAAGCAGCTGATCCCATGAACAGAACTGTGGGTCTGGACAACCAAGGTCTAGTTGGTCTTCAGCGACAAATTATGAGAGAGCAAGATGAGGGTCTTCAGAAGCTGGAGGAGACTGTAATAAGTACAAAACATATTGCTCTGGCTGTCAACGAAGAACTTGACCTTCACACGAGACTAATTGATGACTTGGACCAACATGTAGATGTTACTGACTCTCGATTAAGGCGAGTGCAGAAGAACTTGGCAATTTTAAACAAGCGTACAAAAGGAGGTTGCACTTGCTTGTGCATGATTTTGTCGGTTGTCGGAATCGTAATTCTGGTTGTTGTCATATATCTTCTCGTCAGGGGTGTCGTGAGGACACTGCAGGGGCGTCCCGGGACACTGCAGGGGCATCCCGGGACACCGCAGGGGCTTCCCGGGACACCGCAGGGGCGTCTCGGGACACTGCAGCAGGACACCGCAGGGGCGTCCCGGGACACCGCAGGGGCTTCCCTGGACACCACAGGGGCGTCCTGA 864 49.31 MASSSDSWVKEYNEAVKLADDINGMISERSSVSVSGPEAQRYASAIRRKITILGTRLDSLLALLSKLPGKQPISDKEMNRRRDMVTNLRTKVTQMASQLNMSNFANRDSLLGPEIKAADPMNRTVGLDNQGLVGLQRQIMREQDEGLQKLEETVISTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCLCMILSVVGIVILVVVIYLLVRGVVRTLQGRPGTLQGHPGTPQGLPGTPQGRLGTLQQDTAGASRDTAGASLDTTGAS 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20802549 20813170 - BLOR11719 Blo03g00538 58002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00538 287 SMART tSNARE_6 132 199 IPR000727 -
Blo03g00538 287 Gene3D - 139 201 - -
Blo03g00538 287 CDD SNARE_Qc 140 197 - -
Blo03g00538 287 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 227 - -
Blo03g00538 287 SUPERFAMILY SNARE fusion complex 128 198 - -
Blo03g00538 287 Pfam SNARE domain 174 225 IPR000727 -
Blo03g00538 287 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 137 199 IPR000727 -
Blo03g00538 287 MobiDBLite consensus disorder prediction 240 287 - -
Blo03g00538 287 PANTHER SYNTAXIN 1 227 IPR045242 -
Blo03g00538 287 SUPERFAMILY t-snare proteins 20 100 IPR010989 GO:0016020|GO:0016192
Blo03g00538 287 MobiDBLite consensus disorder prediction 257 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00538 Blo-Chr3:20802549 Blo07g00879 Blo-Chr7:27533929 1.36E-112 dispersed
Blo03g00538 Blo-Chr3:20802549 Blo03g00554 Blo-Chr3:21846350 2.36E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00538 K08503 - cit:102608030 364.385