Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00554 ATGACTTCAGCTCAAGATCCATTCTACGTTGTTAAGGATGAAATCCAAGAATCTATTGACAAGTTGCAATCAACTTTTCCTCAATGGGAGCGTATTTCTGATACAGGAGATAGAGTGGATCTCACAAATGAGCTGCTTGCTAGTTGTGAAAGCGTCGAATGGCAGGTGGATGAATTAGACAAGGCTATAACTGTTGCAGCCAGAGATCCAGCTTGGTATGGCATTGATGAAGTAGAGCTTAAAAAGCGAAGGACATGGACTAGCACAGCTCGTGCTCAGGTTGGCTCTGTGAAAAAGGTTGTGAAAGCTGGTAAGGAGCGCGATGGCATTACCACTACCACAATGAATATGAAGGGGATGCGTCGAGAACTGTTAAGGTTGCCTCGAACTAGTGAAAGAGATAGGTCAAATCAATACAACGACCAAGATAATGATGATTTTATAGCTTCGGAATCAGATCGACAGTTGCTTCTCATAAGGCAACAAGATGAAGAGTTGGATGAGCTCAGTGCTAGCGTGGAAAGAATTGGAGGAGTTGGACTTACAATACATGATGAACTCCTTGGGCAGGAGAAAATCATCGATGAACTAGGAACAGAAATGGATGGTACATCAAATCGCCTTGATTTTGTTCAGAAAAAAGTAGCTGTGGTCATGAAGAAAGCCGGGATTAAGGGGCAGATAATGATGATTTTGTTTTTAATTGTTTTGTTCATCATCCTCTTTGTGCTAGTCTTCTTAACT 744 41.8 MTSAQDPFYVVKDEIQESIDKLQSTFPQWERISDTGDRVDLTNELLASCESVEWQVDELDKAITVAARDPAWYGIDEVELKKRRTWTSTARAQVGSVKKVVKAGKERDGITTTTMNMKGMRRELLRLPRTSERDRSNQYNDQDNDDFIASESDRQLLLIRQQDEELDELSASVERIGGVGLTIHDELLGQEKIIDELGTEMDGTSNRLDFVQKKVAVVMKKAGIKGQIMMILFLIVLFIILFVLVFLT 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21846350 21850097 + BLOR11735 Blo03g00554 58018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00554 248 Gene3D - 2 104 - -
Blo03g00554 248 Gene3D - 163 225 - -
Blo03g00554 248 PANTHER SYNTAXIN-61 1 247 - -
Blo03g00554 248 SUPERFAMILY t-snare proteins 5 99 IPR010989 GO:0016020|GO:0016192
Blo03g00554 248 PANTHER SYNTAXIN 1 247 IPR045242 -
Blo03g00554 248 SUPERFAMILY SNARE fusion complex 155 218 - -
Blo03g00554 248 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Blo03g00554 248 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 156 218 IPR000727 -
Blo03g00554 248 CDD SNARE_Qc 159 216 - -
Blo03g00554 248 SMART tSNARE_6 151 218 IPR000727 -
Blo03g00554 248 Pfam SNARE domain 193 244 IPR000727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00554 K08500 SYP6; syntaxin of plants SYP6 - qsu:112025744 339.732
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00538 Blo-Chr3:20802549 Blo03g00554 Blo-Chr3:21846350 2.36E-09 transposed
Blo07g00879 Blo-Chr7:27533929 Blo03g00554 Blo-Chr3:21846350 9.85E-08 transposed
Blo03g00554 Blo-Chr3:21846350 Blo03g01454 Blo-Chr3:41161869 1.46E-127 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo18g00047 . 82 420 SNARE and Associated Proteins AT3G24350 60.1 5.5e-93 338.2
Blo17g00037 BCT 445 752 SNARE and Associated Proteins AT3G24350 62.3 1.9e-90 329.7
Blo04g00912 BCT 1 286 SNARE and Associated Proteins AT2G18260 53.8 5.1e-76 281.6
Blo15g00703 . 102 394 SNARE and Associated Proteins AT2G18260 50.2 4.3e-75 278.5
Blo01g00722 . 1 289 SNARE and Associated Proteins AT2G18260 50.2 1.5e-72 270.0
Blo16g00051 BCT 1 271 SNARE and Associated Proteins AT2G18260 51.6 6.1e-69 258.1
Blo09g00464 . 22 278 SNARE and Associated Proteins AT3G11820 81.3 3.2e-113 405.2
Blo12g00540 . 1 261 SNARE and Associated Proteins AT3G11820 73.6 7.1e-105 377.5
Blo08g00183 . 954 1204 SNARE and Associated Proteins AT3G11820 66.1 3.3e-94 342.0
Blo14g00365 . 31 281 SNARE and Associated Proteins AT3G11820 65.7 1.3e-93 340.1
Blo09g00464 . 29 278 SNARE and Associated Proteins AT3G52400 70.0 2.4e-90 329.3
Blo12g00540 . 13 261 SNARE and Associated Proteins AT3G52400 65.5 7.5e-84 307.8
Blo14g00365 . 1 281 SNARE and Associated Proteins AT3G52400 56.4 9.1e-82 300.8
Blo08g00183 . 924 1204 SNARE and Associated Proteins AT3G52400 56.4 1.2e-81 300.4
Blo14g00365 . 1 299 SNARE and Associated Proteins AT4G03330 67.9 7.8e-109 390.6
Blo08g00183 . 924 1218 SNARE and Associated Proteins AT4G03330 67.1 2.8e-106 382.1
Blo09g00464 . 1 278 SNARE and Associated Proteins AT4G03330 58.0 5.1e-84 308.1
Blo12g00540 . 10 261 SNARE and Associated Proteins AT4G03330 56.7 1.7e-74 276.6
Blo15g00503 . 136 373 SNARE and Associated Proteins AT4G03330 50.8 1.0e-55 214.2
Blo14g00365 . 1 299 SNARE and Associated Proteins AT1G61290 78.3 1.2e-125 446.4
Blo08g00183 . 924 1226 SNARE and Associated Proteins AT1G61290 77.6 5.0e-124 441.0
Blo09g00464 . 1 272 SNARE and Associated Proteins AT1G61290 63.5 3.1e-89 325.5
Blo12g00540 . 13 261 SNARE and Associated Proteins AT1G61290 61.8 6.9e-81 297.7
Blo14g00365 . 1 299 SNARE and Associated Proteins AT1G11250 76.6 1.8e-121 432.6
Blo08g00183 . 924 1226 SNARE and Associated Proteins AT1G11250 75.9 8.7e-121 430.3
Blo09g00464 . 1 272 SNARE and Associated Proteins AT1G11250 64.3 1.2e-93 340.1
Blo12g00540 . 3 261 SNARE and Associated Proteins AT1G11250 61.0 2.2e-84 309.3
Blo15g00503 . 96 396 SNARE and Associated Proteins AT3G03800 59.8 7.7e-88 320.9
Blo12g00540 . 13 277 SNARE and Associated Proteins AT3G03800 51.5 4.0e-60 228.8
Blo15g00503 . 97 293 SNARE and Associated Proteins AT5G08080 60.4 8.4e-52 200.7
Blo02g00982 . 1 263 SNARE and Associated Proteins AT5G16830 61.3 1.4e-75 280.0
Blo03g00106 . 225 443 SNARE and Associated Proteins AT5G16830 57.3 4.7e-60 228.4
Blo02g00982 . 1 274 SNARE and Associated Proteins AT5G46860 69.7 5.9e-84 307.8
Blo03g00106 . 225 414 SNARE and Associated Proteins AT5G46860 76.3 7.5e-71 264.2
Blo02g00982 . 1 257 SNARE and Associated Proteins AT4G17730 65.8 8.9e-77 283.9
Blo03g00106 . 225 414 SNARE and Associated Proteins AT4G17730 76.2 3.5e-73 271.9
Blo18g00562 BCT 1 182 SNARE and Associated Proteins AT4G17730 51.5 1.1e-42 170.6
Blo02g00982 . 65 256 SNARE and Associated Proteins AT1G32270 59.4 9.2e-50 194.5
Blo03g00106 . 289 440 SNARE and Associated Proteins AT1G32270 64.5 1.2e-44 177.6
Blo04g00243 . 1 337 SNARE and Associated Proteins AT5G05760 65.8 2.4e-111 399.1
Blo18g00047 . 82 420 SNARE and Associated Proteins AT3G24350 60.1 5.5e-93 338.2
Blo17g00037 BCT 445 752 SNARE and Associated Proteins AT3G24350 62.3 1.9e-90 329.7
Blo18g00633 . 1 341 SNARE and Associated Proteins AT5G26980 74.8 9.1e-124 440.3
Blo17g00673 . 115 418 SNARE and Associated Proteins AT5G26980 71.4 1.6e-112 402.9
Blo18g00633 . 1 339 SNARE and Associated Proteins AT4G02195 62.8 2.1e-99 359.4
Blo17g00673 . 115 416 SNARE and Associated Proteins AT4G02195 60.9 7.1e-92 334.3
Blo18g00633 . 1 339 SNARE and Associated Proteins AT3G05710 74.9 4.5e-126 448.0
Blo17g00673 . 115 416 SNARE and Associated Proteins AT3G05710 71.7 2.6e-113 405.6
Blo03g00538 . 1 220 SNARE and Associated Proteins AT1G16240 72.7 2.3e-84 308.9
Blo07g00879 . 34 267 SNARE and Associated Proteins AT1G16240 58.5 7.1e-70 260.8
Blo03g00538 . 1 220 SNARE and Associated Proteins AT1G79590 71.8 2.0e-84 309.3
Blo07g00879 . 34 267 SNARE and Associated Proteins AT1G79590 59.8 1.6e-70 263.1
Blo03g00554 . 55 234 SNARE and Associated Proteins AT1G28490 66.1 5.8e-60 227.6
Blo03g01454 . 55 215 SNARE and Associated Proteins AT1G28490 60.9 1.6e-49 193.0
Blo07g01404 . 1 248 SNARE and Associated Proteins AT3G09740 72.4 4.0e-93 338.2
Blo14g00167 . 1 233 SNARE and Associated Proteins AT3G09740 61.0 4.8e-70 261.5
Blo07g01404 . 1 248 SNARE and Associated Proteins AT3G45280 60.4 5.5e-74 274.6
Blo14g00167 . 1 236 SNARE and Associated Proteins AT3G45280 57.7 1.4e-66 250.0
Blo07g01404 . 1 248 SNARE and Associated Proteins AT3G61450 60.6 5.2e-77 284.6
Blo14g00167 . 1 235 SNARE and Associated Proteins AT3G61450 53.8 3.6e-62 235.3
Blo04g00134 . 624 868 SNARE and Associated Proteins AT1G51740 72.4 2.7e-91 332.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003549 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 4 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00554 Blo_Chr03 FPKM 5.008055 7.232789 11.073083 10.20743 7.773207 8.877493 8.20125 11.048979 10.676581 9.523623