Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00554 ATGACTTCAGCTCAAGATCCATTCTACGTTGTTAAGGATGAAATCCAAGAATCTATTGACAAGTTGCAATCAACTTTTCCTCAATGGGAGCGTATTTCTGATACAGGAGATAGAGTGGATCTCACAAATGAGCTGCTTGCTAGTTGTGAAAGCGTCGAATGGCAGGTGGATGAATTAGACAAGGCTATAACTGTTGCAGCCAGAGATCCAGCTTGGTATGGCATTGATGAAGTAGAGCTTAAAAAGCGAAGGACATGGACTAGCACAGCTCGTGCTCAGGTTGGCTCTGTGAAAAAGGTTGTGAAAGCTGGTAAGGAGCGCGATGGCATTACCACTACCACAATGAATATGAAGGGGATGCGTCGAGAACTGTTAAGGTTGCCTCGAACTAGTGAAAGAGATAGGTCAAATCAATACAACGACCAAGATAATGATGATTTTATAGCTTCGGAATCAGATCGACAGTTGCTTCTCATAAGGCAACAAGATGAAGAGTTGGATGAGCTCAGTGCTAGCGTGGAAAGAATTGGAGGAGTTGGACTTACAATACATGATGAACTCCTTGGGCAGGAGAAAATCATCGATGAACTAGGAACAGAAATGGATGGTACATCAAATCGCCTTGATTTTGTTCAGAAAAAAGTAGCTGTGGTCATGAAGAAAGCCGGGATTAAGGGGCAGATAATGATGATTTTGTTTTTAATTGTTTTGTTCATCATCCTCTTTGTGCTAGTCTTCTTAACT 744 41.8 MTSAQDPFYVVKDEIQESIDKLQSTFPQWERISDTGDRVDLTNELLASCESVEWQVDELDKAITVAARDPAWYGIDEVELKKRRTWTSTARAQVGSVKKVVKAGKERDGITTTTMNMKGMRRELLRLPRTSERDRSNQYNDQDNDDFIASESDRQLLLIRQQDEELDELSASVERIGGVGLTIHDELLGQEKIIDELGTEMDGTSNRLDFVQKKVAVVMKKAGIKGQIMMILFLIVLFIILFVLVFLT 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21846350 21850097 + BLOR11735 Blo03g00554 58018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00554 248 Gene3D - 2 104 - -
Blo03g00554 248 Gene3D - 163 225 - -
Blo03g00554 248 PANTHER SYNTAXIN-61 1 247 - -
Blo03g00554 248 SUPERFAMILY t-snare proteins 5 99 IPR010989 GO:0016020|GO:0016192
Blo03g00554 248 PANTHER SYNTAXIN 1 247 IPR045242 -
Blo03g00554 248 SUPERFAMILY SNARE fusion complex 155 218 - -
Blo03g00554 248 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Blo03g00554 248 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 156 218 IPR000727 -
Blo03g00554 248 CDD SNARE_Qc 159 216 - -
Blo03g00554 248 SMART tSNARE_6 151 218 IPR000727 -
Blo03g00554 248 Pfam SNARE domain 193 244 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00538 Blo-Chr3:20802549 Blo03g00554 Blo-Chr3:21846350 2.36E-09 transposed
Blo07g00879 Blo-Chr7:27533929 Blo03g00554 Blo-Chr3:21846350 9.85E-08 transposed
Blo03g00554 Blo-Chr3:21846350 Blo03g01454 Blo-Chr3:41161869 1.46E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00554 K08500 - qsu:112025744 339.732