Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00556 ATGGTTGAACTAGAAGTTCAGATTCCAACTGCTTTTGATCCATTTGCCGACGCCAAAGATTCAGATGCTCCTGGGGCAAAAGAGTATGTTCATATCCGAGTTCAGCAAAGAAATGGTAAAAAGTGCCTGACTACAGTTCAGGGGCTGAAGAAAGAGTTCAGCTACGAGAAGATCCTTAAAGACGTCAAAAGAGAGTTCTGCTGCAATGGGAATGTCGTGCAGGACAAAGAATTGGGGAAGATAATTCAGCTCCAAGGTGATCAACGCAAGAACGTTTCTCAGTTTCTTGTTCAGGCTGGTCTTGTCAAGAAGGATCATATTAAGATTCATGGTTTCTGA 339 42.77 MVELEVQIPTAFDPFADAKDSDAPGAKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKREFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDHIKIHGF 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21901163 21901501 + BLOR11737 Blo03g00556 58020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00556 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743
Blo03g00556 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 112 - -
Blo03g00556 112 PANTHER PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG 1 112 - -
Blo03g00556 112 Pfam Translation initiation factor SUI1 27 100 IPR001950 GO:0003743|GO:0006413
Blo03g00556 112 SUPERFAMILY eIF1-like 4 112 IPR036877 GO:0003743|GO:0006413
Blo03g00556 112 Gene3D - 1 112 - -
Blo03g00556 112 PIRSF Transl_init_SUI1_Euk 1 112 IPR005874 GO:0003743
Blo03g00556 112 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 5 112 IPR005874 GO:0003743
Blo03g00556 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00556 Blo-Chr3:21901163 Blo10g00809 Blo-Chr10:25494621 4.64E-55 dispersed
Blo03g00556 Blo-Chr3:21901163 Blo03g01452 Blo-Chr3:41149327 2.12E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00556 K03113 - csv:101202908 218.394