Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00559 ATGATGCCTCACATGTCGCAGATGGCGTCGAATCAGATGACCCAGCAGTATCAGCAGCAGCCGATGCCTCCCCAGCAGCAGTGGATGATGATGCCGCCGCAGCAGCAGCACGCGCCGTCACAGCCGATGCCTCCGCCTGTTGGATGGACTCCGCAGCCGGTACCTCCCCCTATCTCTGTGCCCGCCCAGCAGTTTCCCCCAGCTACGGGATCCGGTGAGATTCGTTCTCTTTGGATCGGGGATTTGCAGCAGTGGATGGACGAGAACTATCTCGTCTCCTGTTTCGGTCAGACTGGTGAGGTTATATCTGCTAAGGTTATTCGCAATAAGTTTTCTGGAATGCCTGAAGGTTATGGGTTTGTTGAGTTTGTAAGCAAGGCTGCTGCAGAGAGGACTTTACAAACGTTCAATGGTACATTGATGCCAAATTCGGACCAGAATTTTCGACTCAACTGGGCTACTCTCAGTGCGGGTGAAAGACGCCAAGACGATGGTTTTGATTATACAATTTTTGTTGGAGATTTGGCTGATGATGTCACTGATTATACCCTTCAAGAAACATTTAAAGCAGTGTACCACTCAGTGAAGGGGGCAAAAGTTGTCACTGATCGAACCACTGGGCGTTCCAAGGGTTATGGGTTTGTGAAGTTTGGTGATGAGAATGAACAGCTTCGTGCCATGACTGAAATGAATGGTATGTACTGTTCTACTAGGCCCATGCGAGTTGGCCATGCTGCGTCAAAGAAATCTATTGGCGACTTTGGACGACCTCAAAAAGTTACGTACGAGAATACTCAAGGAAATCTGGGGGAGAATGATCCAAATAATACAACAATATTTGTTGGAGGCTTGGATACAAGCGTTACAGATGAGCTATTGAGACAAGTTTTTTCCCAATTTGGAGAGCTTGTACATGTGAAAATTCCTGCTGGAAAGCGCTGTGGTTTTGTTCAGTTTGTTAACAGAACTTGTGCAGAGCAAGCTCTATCCATGCTTAATGGAACTCAATTAGGTGGTCAAAATATTCGACTTTCCTGGGGGCGTAGTCCAACAAATAAACAGCATACATATATACCTAGTGACTCTGAAATGAGCGTGGTGGGGTTTGATATTGGCAATGAGAACTGTGTAATAGCTGTGGTGAAGAAACGAGGTATTGATGTTTTGCTAAATGATGAATCAAAACGGGAAACTCCAGCAGTTGTATGCTTTAGCGAGAAACAGCGATTTCTGGGATCTGCAGGAGCTGCATCTGCAATGATGAATCCAAAATCAACAATATCTCAGGTGAAGAGACTCACTGGCCGGAGGTTTAATGACCCTGGCATCCAAAATGATCTGAAGCTGTTATCTTTTGAAACTTCTGAAGCTTCAGACGGTGGTATATTGATTCACTTGAAATATTTGGGGGAGACTCATACATTTACTCCTGTGCAGATTATGGCAATGCTCTTTGCACATTTGAAAGATATAACTGAGAAAAATTTGGAAGCACCCATTTCAGATTGTGTTATTGGTATTCCGTCATACTTCACTGACATGCAGAGACGAGCATATCTTGATGCTGCAGCAATTGCTGGGTTAAAATCTTTAAGGCTTATGCATGATTGTACTGCAACTGCACTTACCTATGGGATTTATAAAACACATTATTCTATCACAGGCATATCCTATGCTGCTTTTGTTGATATTGGTCATTGTGACACTCAAGTCTGTATAGTCTCATTTGCGGCTGGACATATGAAAATATTGTCTCATACTTTTGATGGAAGCTTGGGAGGGAGAGACTTTGATGAGGTTTTGTTTGGTTACTTTGCAACAAAATTCCAGGAGCAGTATAATATTGATGTGAATTCAAATGTCAAGGCAGGTATTCGGCTGCGGGCTGCCTGTGAGAAGGTGAAGAAAGTTTTAAGTGCAAATCTAGAGGCACCTCTAAATATTGAGTGCTTGATGGATGAGAAAGATGTCAAGGGGTTCATTAAGAGGGAAGAATTTGAGAAGCTAGCTTCTGGATTGTTGGAGAGAATTAGCATTCCTTGTAATAGAGCTTTAGCTGATGCAGGATTGACTGCAGAGAAGATCCATTCTGTTGAGCTGGTTGGATCGGGGTCTAGGATTCCGGCTATTTCTAGATTATTAATTACACTCTTTAAGAGAGAGCCCAGTCGGACACTAAATGCCAGTGAATGTGTAGCTCGTGGGTGTGCTTTACAGTGTGCAATGCTAAGCCCAATTTTCCGAGTAAGAGATTATGAGGTTGAGGATTCAATTCCTTTCTCTATTGGGTTCTCATTAGATGGAGGCCCAATTAGCATCGGCTCAAATGGGATGTTGTTTCCTAAAGGCCAATCCATTCCATGCAGTAAAGTTTTGTCATTTCAACGGGGGCCTTTGTTTCATTTAGAAGCATACTATGCTGATCCAGAAGAACTGCCAGCTGACATTCCTTCAAAAATATGTTATTACACAGTGGGCCCTTTACAAGGTTACCATAATGAGAAGGCAAAGATTAAAGTTAGAGTTCAACTAAATCTCCATGGGATTGTTGCTGTTGATTCAGCTACTGTATGTAAATCTAATTGTGACTTTATTCATCATTTGTTTATAACATTTATGTTAATAGAAGATATTGAAGAAGATTCAGAGTGCAATCCTGCTTCAGGTAATTTTGAGATTGATGCAGTTGATGGTGATGGAAGCAACATTGGTCAGTCCAAAGTTTCGCATTCTTCGAGTTGCAAGGTATTGCAGGCCAATGCTATGAAAGAAGGTAAGATGTCCAAGAGGATTGAGCTACCCATTAGTGAGCACATATATGGTGGAATGACCCAGGCAGAGCTTTTGGAAGCCCAAGAGAGAGAACTTCAGCTTGCCCAACAGGACAGGACAATTGAACAAACCAAAAACAAGAAAAATGCCTTGGAGTCATATGTCTATGAAATGCGGAATAAGCTTTTCAACACATATCGGAGTTTTGCGACTGAAGAAGAGAGGGAGGGAATCTCTACAAGCCTTCAACGGACAGAGGAGTGGCTTTACGAGGATGGAGATGATGAAACTGAAAGTACTTATACTTCAAAGTTGGAGAATCTTAAGAAGTTGGTAGATCCTATTGAAGATCGATATAGAGATGAAGAAGCGCGAGCGCAAGCTGCCAATGCCCTGTCAAAGTGCATATTGGAATATCGAAGGGCTGCAGATTCACTCCCCCCAAAGGACAAGGAAATGATCATGGAGGAGTGCAATAAGGCAGAGCAGTGGCTCAACGAGAGAACCACCCAACAAGATTTGATGCCGAAAAACACAGACCCAATCTTATGGTCAAGTGATATCAAAAGCCGGGGAGAGAATTTGGATGGGACATGCAAGCATATCTTGATGTCGACAGATTCTCATTCACATTCTGAAGACTGA 3417 43.02 MMPHMSQMASNQMTQQYQQQPMPPQQQWMMMPPQQQHAPSQPMPPPVGWTPQPVPPPISVPAQQFPPATGSGEIRSLWIGDLQQWMDENYLVSCFGQTGEVISAKVIRNKFSGMPEGYGFVEFVSKAAAERTLQTFNGTLMPNSDQNFRLNWATLSAGERRQDDGFDYTIFVGDLADDVTDYTLQETFKAVYHSVKGAKVVTDRTTGRSKGYGFVKFGDENEQLRAMTEMNGMYCSTRPMRVGHAASKKSIGDFGRPQKVTYENTQGNLGENDPNNTTIFVGGLDTSVTDELLRQVFSQFGELVHVKIPAGKRCGFVQFVNRTCAEQALSMLNGTQLGGQNIRLSWGRSPTNKQHTYIPSDSEMSVVGFDIGNENCVIAVVKKRGIDVLLNDESKRETPAVVCFSEKQRFLGSAGAASAMMNPKSTISQVKRLTGRRFNDPGIQNDLKLLSFETSEASDGGILIHLKYLGETHTFTPVQIMAMLFAHLKDITEKNLEAPISDCVIGIPSYFTDMQRRAYLDAAAIAGLKSLRLMHDCTATALTYGIYKTHYSITGISYAAFVDIGHCDTQVCIVSFAAGHMKILSHTFDGSLGGRDFDEVLFGYFATKFQEQYNIDVNSNVKAGIRLRAACEKVKKVLSANLEAPLNIECLMDEKDVKGFIKREEFEKLASGLLERISIPCNRALADAGLTAEKIHSVELVGSGSRIPAISRLLITLFKREPSRTLNASECVARGCALQCAMLSPIFRVRDYEVEDSIPFSIGFSLDGGPISIGSNGMLFPKGQSIPCSKVLSFQRGPLFHLEAYYADPEELPADIPSKICYYTVGPLQGYHNEKAKIKVRVQLNLHGIVAVDSATVCKSNCDFIHHLFITFMLIEDIEEDSECNPASGNFEIDAVDGDGSNIGQSKVSHSSSCKVLQANAMKEGKMSKRIELPISEHIYGGMTQAELLEAQERELQLAQQDRTIEQTKNKKNALESYVYEMRNKLFNTYRSFATEEEREGISTSLQRTEEWLYEDGDDETESTYTSKLENLKKLVDPIEDRYRDEEARAQAANALSKCILEYRRAADSLPPKDKEMIMEECNKAEQWLNERTTQQDLMPKNTDPILWSSDIKSRGENLDGTCKHILMSTDSHSHSED 1138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22161794 22171836 - BLOR11740 Blo03g00559 58023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00559 1138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 155 IPR000504 GO:0003723
Blo03g00559 1138 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 750 861 IPR029047 -
Blo03g00559 1138 Gene3D - 401 476 - -
Blo03g00559 1138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 247 IPR000504 GO:0003723
Blo03g00559 1138 Gene3D - 256 357 IPR012677 -
Blo03g00559 1138 SUPERFAMILY RNA-binding domain, RBD 168 351 IPR035979 GO:0003676
Blo03g00559 1138 PANTHER HEAT SHOCK 70 KDA PROTEIN 16 364 1138 - -
Blo03g00559 1138 MobiDBLite consensus disorder prediction 1 36 - -
Blo03g00559 1138 Coils Coil 1029 1049 - -
Blo03g00559 1138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 349 IPR000504 GO:0003723
Blo03g00559 1138 CDD RRM3_NGR1_NAM8_like 276 347 - -
Blo03g00559 1138 SUPERFAMILY Actin-like ATPase domain 559 743 IPR043129 -
Blo03g00559 1138 Gene3D - 167 244 IPR012677 -
Blo03g00559 1138 CDD RRM2_SECp43_like 167 246 - -
Blo03g00559 1138 Gene3D Actin; Chain A, domain 4 593 676 - -
Blo03g00559 1138 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 946 1043 IPR029048 -
Blo03g00559 1138 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 747 976 IPR029047 -
Blo03g00559 1138 SUPERFAMILY Actin-like ATPase domain 364 548 IPR043129 -
Blo03g00559 1138 SUPERFAMILY RNA-binding domain, RBD 37 156 IPR035979 GO:0003676
Blo03g00559 1138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 143 IPR000504 GO:0003723
Blo03g00559 1138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 343 IPR000504 GO:0003723
Blo03g00559 1138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 238 IPR000504 GO:0003723
Blo03g00559 1138 Coils Coil 949 978 - -
Blo03g00559 1138 PRINTS 70kDa heat shock protein signature 726 746 - -
Blo03g00559 1138 PRINTS 70kDa heat shock protein signature 751 770 - -
Blo03g00559 1138 PRINTS 70kDa heat shock protein signature 365 378 - -
Blo03g00559 1138 PRINTS 70kDa heat shock protein signature 393 405 - -
Blo03g00559 1138 PRINTS 70kDa heat shock protein signature 503 523 - -
Blo03g00559 1138 PRINTS 70kDa heat shock protein signature 695 711 - -
Blo03g00559 1138 CDD HSPA4_like_NDB 365 744 - -
Blo03g00559 1138 Gene3D - 549 723 - -
Blo03g00559 1138 SMART rrm1_1 278 345 IPR000504 GO:0003723
Blo03g00559 1138 SMART rrm1_1 169 243 IPR000504 GO:0003723
Blo03g00559 1138 SMART rrm1_1 76 151 IPR000504 GO:0003723
Blo03g00559 1138 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 1052 1129 IPR029048 -
Blo03g00559 1138 PANTHER HSC70CB, ISOFORM G-RELATED 364 1138 - -
Blo03g00559 1138 Pfam Hsp70 protein 366 1043 IPR013126 GO:0005524|GO:0140662
Blo03g00559 1138 Gene3D - 74 154 IPR012677 -
Blo03g00559 1138 Gene3D - 368 737 - -
Blo03g00559 1138 MobiDBLite consensus disorder prediction 1 44 - -
Blo03g00559 1138 Gene3D - 943 1055 IPR029048 -
Blo03g00559 1138 CDD RRM1_SECp43_like 76 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00559 K09489 HSPA4; heat shock 70kDa protein 4 - jre:108983997 1072.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01013 Blo-Chr1:30772712 Blo03g00559 Blo-Chr3:22161794 1.06E-137 dispersed
Blo03g00559 Blo-Chr3:22161794 Blo06g00682 Blo-Chr6:29972290 0 dispersed
Blo03g00752 Blo-Chr3:31666712 Blo03g00559 Blo-Chr3:22161794 1.00E-64 dispersed
Blo06g00757 Blo-Chr6:30832179 Blo03g00559 Blo-Chr3:22161794 5.75E-34 dispersed
Blo14g00578 Blo-Chr14:9247743 Blo03g00559 Blo-Chr3:22161794 5.46E-06 dispersed
Blo19g00079 Blo-Chr19:1982801 Blo03g00559 Blo-Chr3:22161794 6.99E-73 dispersed
Blo03g00559 Blo-Chr3:22161794 Blo05g00100 Blo-Chr5:926474 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g507 Blo03g00559 . Bda07g00360 . . . . . . . Cma01g01133 Cma09g00950 . Car09g00863 . Cpe06g00765 Cpe02g00768 . . . . . . . . . . . . . . . . Cone14ag1142 Cone15ag1160 Lsi04g01203 . . . . . . . Bpe11g00547 . . Bma14g00339 . Cmo01g01184 Cmo09g00948 . . . Car16g00544 . . . . . . . . . Cla05g01487 . Cec05g1613 . Clacu05g1583 Cmu05g1486 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004049 1 5 1 1 1 1 2 3 1 1 1 1 2 1 1 2 1 2 2 2 1 1 1 1 1 1 1 3 2 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00559 Blo_Chr03 FPKM 1.859259 0.961524 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0