Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00568 ATGGCGTCCTCTTCTTCTTCCTCTTTGCTTTCCAGTGCCCTTGTTGTCCTGTCGATCCTGATTTCTCTAATCGCACATCAATTGACGGCCTTTATGTTGCCTGTGCACCCTCGCGATGTCCTCCCTTTCTTGCCTAGACAACTTTCCTGGCCCATTCTTAACTCCCTCCATTCCCCTGTTGATCTTCTCCCCACTTTTGTTGGGACTGTGTCTTCTCATAACGACACTCCCTATTGGAAGGGTGCTTGTTTTTATAAAAATACGGCTTGGATGGAATTTCACAATAAGAGTGGCTCGGAATTTGGTGGTGGTACGCTGCATATCAAGATTTTAAAAACTTTGACATTGATATCTCTGACGTATGTTAGAAACAAAGGCGTGTCCATTTTCCTCATGCAAGCAGGGATGCTGGGAACCCTTGAAGCACTCTGGGATGTCTTCCCTTTATTTACAAATTCCGGATGGGGAGAGAAATCTAACATTGGATTTCTTGAGAAGCATATGGGAGCAAATTTTGTACAGCGTCCTCAGCCATGGGTGGCAAATGTAAGTGCTGATGATATTCACTCTGGAGATTTCCTTGCCTTATCAAAAATTCGTGGGCGATGGGGTGGTTTTGAGACTCTAGAGAAGTGGGTTAGTGGAGCATATGCTGGTCATACTGCTGTTTGCTTAAGGGATTCTGAAGGAAAGTTGTGGGTGGGGGAATCAGGCCATGAAAATGAACAGGGAGAAGATGTTATTGCTGTGTTACCATGGGATGAATGGTGGAACTTTGAGTTAAACACAGATGATGCCAACCCTCATATATCATTGCTTCCTTTGCATCCTGATTTGCGGGCCAAATTTAATGAGACTGCTGCTTGGGAGTATGTACGCAGCATGGACGGCAAACCTTATGGTTATCACAATCTGTTATTCAGCTGGATAGACACCATAGATGGCAACTATCCACCCCCATTAGATGCTCATCTGATTGCTTCTGTAATGACTGTCTGGAATCAAATACAGCCAGCATACGCTGCAAATATGTGGAATGAAGCCTTAAACAAACGACTAGGAACTGAGGGTCTAGGTCTTTCTGATATTCTGGTTGAAGTTGAAAAGCGTGGATCATCTTTTGACGAACTGCTGGCAATTCCTGAACGGGATGACTGGATCTACACGGATGGGAAGTCAACATCTTGTGTCGCATTTGTCCTTGAAATGTATAAGGAAGCAGGGCTGTTTGGTCCAATTGCAAGCTCCATAGAAGTCACAGAGTTCACGATTAAAGATGCATACATGCTCAATTTCTTTGAAAATAATTCAAGCCGCCTGCCTGATTGGTGCGCCAGTGGGGATGACATGAAGCTTCCATTTTGTCAGATTCGGGGTCAAGTGTCGAAGAAGCGTAAGGTGGTGGCTCCCTCAGAGACCGCGGGTCCAGTGAGCGTGTCTGTAGAACCCGGGTTGTTCAGTTGGGCCTTCTCCAAAGAACAGTACGATAATGACATTGTACCTAGTGCAATAATCATATCTAGGAAGATAGATTTCAATTCGTTCGCTGATTTTGGATTGAAGGACATGTTTGAGCGAATTGGTTTGGATAAATTGTGCACGATGGGGGGTTATTACTATGAGAGGGCTATAAAACTGTTTTATGCAAATTTGGAGTTAGACATCTCCAGTGACAGAGAGTTGAGGACTTTTCTGTGTGGAAAACAAATTAAGATAACTCTAGGACAGTTGAATGAGCTAATTGGATGCTCCACGGAGGAGCTGTTGGAGGAGTATTTCCATGTGTCGAAGGACCCCGATTTTGTAAAACAAGGAGAAGGTCTTGCATTGCAAAAGCGATTGGTTCACAACCCTATAGCCGTTGAATCTTTCTTCCAGCCCAAATCAAAGGACCTCGATGCTAAAGCAAGAGTCATCCATCACATGATCACTCACACAGTTGTGCCTCGTGATAGACATAGAGACCTTGTCACCGCCATGGATCTCTACGTGATGGAGAAACTCTACAATGGAAAGAGGTTCAACCTTGCATATGTCATCATGCAGCAAATGAAGGCAAGTCTGAATAGTGCAAGGAAGAATCTCCCGTATAATTGGCTCATTCAGCGCATTGTTTACAGCAGCGGAGAGGTGGCAGCTATACCTCCTGCACCTCGTTCTTCCACGTCAGCTGCACCTCCGCCTTCCACGTCAGCTGCACCTCTGCCTTCCACGTCCACTGCACTAATTCCATGGATGACAGATGCACAACCATCATATCATGTGGAGGTGGAGGATGATTTTGTGCATCCTACGGCAGACGATACACGTCTCCCTCCCCAGTCCTCGCCATTTGTACTCATCAGTGAGGAAAGGTGGCAGTGGCTTGTCGCCCAACTTGGTAAGATTCAAGCCAAGTTGGATAGACAGGAGAGCCAACTTGGTGAGCTTCAAGCCACTGTACTACAAATGAAAGAAGTCTCCTATCATCATGCAACTGTCCCCTCCTCTAACCCTTGCCAAAGTTTAGAAGATTTTGGGAACGAGTCCTCCAGTGATGGGTCCTACAGCGGGTCAAAGGATAACAGTGCAAGTGCCGGTGAAATTGATGGACGAGTTCATGGCACTTGCACGAGTAAATACGAAGAACAACAAGGAGACGTGTGCTTTACTTTGTGGCTCCAAGGTGAGAACCAACACGTTATATTTCAAGTCTCTCAGCCTTTAGGGTGGTCAGTGATTGCCAAGTGTGAGAAGAAGGGCTTCCATCTTCACAATCCACACAATCAAGAGGATATGTATGAGGAGACCACTTATGTTGAGATGAGTTCTGACTGGCAGTTCAAGGTTATCGATATCCAGGACAAGGAGCCATCCATTTTAGAAGATGCACCAGTGATAGAACAGGCACCAGCTAAAAAAGAGGCACCACCTGTAACATATACAAGAACTATTGGCAAGCTTTTTTGTGGTCTTAGAACACAAAAGATCGATTGCTTTAGCCATCTGGTTATGTTTCTTAACGATCCTAGTCATTATGCCCGTTCTAATCATCTTGAACATAGTGAGGATCGGTTTGTCCCAGGCTGGCAAGAAGCAGGCATTGTAGCACTCGCTCAAATTATTGAGGCCCATGTCGCACTTTCGGATGGAACTGAAAGCATGTTTCAACCAACACCTCGGGTTAAGTTTCTGCAGATATGCGTGTGCTGA 3192 45.36 MASSSSSSLLSSALVVLSILISLIAHQLTAFMLPVHPRDVLPFLPRQLSWPILNSLHSPVDLLPTFVGTVSSHNDTPYWKGACFYKNTAWMEFHNKSGSEFGGGTLHIKILKTLTLISLTYVRNKGVSIFLMQAGMLGTLEALWDVFPLFTNSGWGEKSNIGFLEKHMGANFVQRPQPWVANVSADDIHSGDFLALSKIRGRWGGFETLEKWVSGAYAGHTAVCLRDSEGKLWVGESGHENEQGEDVIAVLPWDEWWNFELNTDDANPHISLLPLHPDLRAKFNETAAWEYVRSMDGKPYGYHNLLFSWIDTIDGNYPPPLDAHLIASVMTVWNQIQPAYAANMWNEALNKRLGTEGLGLSDILVEVEKRGSSFDELLAIPERDDWIYTDGKSTSCVAFVLEMYKEAGLFGPIASSIEVTEFTIKDAYMLNFFENNSSRLPDWCASGDDMKLPFCQIRGQVSKKRKVVAPSETAGPVSVSVEPGLFSWAFSKEQYDNDIVPSAIIISRKIDFNSFADFGLKDMFERIGLDKLCTMGGYYYERAIKLFYANLELDISSDRELRTFLCGKQIKITLGQLNELIGCSTEELLEEYFHVSKDPDFVKQGEGLALQKRLVHNPIAVESFFQPKSKDLDAKARVIHHMITHTVVPRDRHRDLVTAMDLYVMEKLYNGKRFNLAYVIMQQMKASLNSARKNLPYNWLIQRIVYSSGEVAAIPPAPRSSTSAAPPPSTSAAPLPSTSTALIPWMTDAQPSYHVEVEDDFVHPTADDTRLPPQSSPFVLISEERWQWLVAQLGKIQAKLDRQESQLGELQATVLQMKEVSYHHATVPSSNPCQSLEDFGNESSSDGSYSGSKDNSASAGEIDGRVHGTCTSKYEEQQGDVCFTLWLQGENQHVIFQVSQPLGWSVIAKCEKKGFHLHNPHNQEDMYEETTYVEMSSDWQFKVIDIQDKEPSILEDAPVIEQAPAKKEAPPVTYTRTIGKLFCGLRTQKIDCFSHLVMFLNDPSHYARSNHLEHSEDRFVPGWQEAGIVALAQIIEAHVALSDGTESMFQPTPRVKFLQICVC 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22290938 22301487 - BLOR11749 Blo03g00568 58032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00568 1063 MobiDBLite consensus disorder prediction 715 737 - -
Blo03g00568 1063 PANTHER OS01G0793500 PROTEIN 120 460 - -
Blo03g00568 1063 MobiDBLite consensus disorder prediction 826 857 - -
Blo03g00568 1063 PANTHER PLANT/F10M23-360 PROTEIN 20 112 - -
Blo03g00568 1063 PANTHER OS01G0793500 PROTEIN 20 112 - -
Blo03g00568 1063 PANTHER PLANT/F10M23-360 PROTEIN 120 460 - -
Blo03g00568 1063 Coils Coil 793 820 - -
Blo03g00568 1063 MobiDBLite consensus disorder prediction 826 860 - -
Blo03g00568 1063 Pfam Putative plant transposon protein 528 709 IPR046796 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00568 - - - minc:123201992 755.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00568 Blo-Chr3:22290938 Blo11g00881 Blo-Chr11:17286262 0 dispersed
Blo07g00550 Blo-Chr7:14887921 Blo03g00568 Blo-Chr3:22290938 1.68E-59 dispersed
Blo09g00099 Blo-Chr9:1900033 Blo03g00568 Blo-Chr3:22290938 6.06E-75 dispersed
Blo09g00167 Blo-Chr9:5537658 Blo03g00568 Blo-Chr3:22290938 1.91E-66 dispersed
Blo11g00620 Blo-Chr11:6332663 Blo03g00568 Blo-Chr3:22290938 1.99E-147 dispersed
Blo01g01335 Blo-Chr1:50914503 Blo03g00568 Blo-Chr3:22290938 5.55E-40 transposed
Blo04g01250 Blo-Chr4:24654042 Blo03g00568 Blo-Chr3:22290938 1.13E-172 transposed
Blo06g00316 Blo-Chr6:18184109 Blo03g00568 Blo-Chr3:22290938 3.16E-45 transposed
Blo06g00375 Blo-Chr6:22213038 Blo03g00568 Blo-Chr3:22290938 1.14E-36 transposed
Blo06g00493 Blo-Chr6:26646715 Blo03g00568 Blo-Chr3:22290938 9.96E-73 transposed
Blo11g00843 Blo-Chr11:14627026 Blo03g00568 Blo-Chr3:22290938 9.75E-21 transposed
Blo16g00458 Blo-Chr16:18168929 Blo03g00568 Blo-Chr3:22290938 8.86E-43 transposed
Blo03g00568 Blo-Chr3:22290938 Blo03g01446 Blo-Chr3:41034254 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g490 Blo03g00568 . Bda07g00353 . . Bpe08g01129 . . . . Cma01g01136 Cma09g00944 . Car09g00858 . Cpe06g00760 Cpe02g00765 . . . . . . . . . . . . . . . . . . Lsi04g01212 . . . . . . . Bpe11g00540 . . Bma14g00344 . Cmo01g01187 Cmo09g00942 . . . Car16g00547 . . . . . . . . . Cla05g01498 Cam05g1616 . Cco05g1644 Clacu05g1600 Cmu05g1497 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003129 0 0 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00568 Blo_Chr03 FPKM 8.731153 9.624166 12.643837 12.032285 5.739019 6.879649 7.990177 5.553085 5.712609 6.593187