Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00575 ATGGCCGCCTCCTCTATCCTTGCCTCCAAAACTCTCCCTTCTTCGCTTTCGTTTCCTCATTCTATCTCTCAATTGCCCTTCGAGGCCGAGAGAGTTGCTATCCGCCCCTCGTCTCTTTCGAGGACGGCCTCCATTTCCTGCGCCCTCACCAAAGACAGCTCTCTCGAAATGGAAGGAAAGGTCAGTTCCGTCCTGAGCCTACGACCGGATTCTTTCGGACGGTTTGGCAAGTTTGGGGGCAAGTATGTGCCGGAAACCTTAATGCACGCCCTCACCGAGCTCGAGACCGCATTTCACCAGCTCGCAGGGGACGAGGATTTTCAGAAAGAGTTAGATGGGATTCTGAAAGATTATGTGGGAAGGGAGAGCCCCCTTTACTTCGCCGAGCGACTTACAGGCCATTACAGACGTCCTAGCGGGGAAGGGCCTCATATTTACCTGAAGAGAGAAGATCTCAACCACACAGGTGCTCACAAAATCAACAATGCCGTTGCTCAAGCTTTGCTTGCCAAGCGATTGGGAAAGAAGCGAATCATAGCTGAAACTGGAGCCGGACAGCATGGGGTCGCCACTGCAACTGTCTGTGCAAGGTTTGGGCTCGGGTGTATCATCTACATGGGTGCCCAAGATATGGAGAGGCAATCACTCAATGTGTTTAGAATGCGCCTTCTCGGGGCTGAGGTTATAGCAGTCCATTCTGGTACAGCTACATTGAAAGATGCTACATCAGAAGCTATAAGGGACTGGGTGACTAACGTAGAGACGACTCACTACATTTTGGGCTCAGTTGCCGGGCCGCATCCATATCCAATGATGGTCAGAGAGTTCCATGCAGTAATCGGCAAGGAAACAAGAAGACAAGCAATGGAGAAGTGGGGAGGGAAACCAGACATTCTGGTCGCATGTGTTGGTGGCGGTTCAAACGCCATGGGGGTATTTCACGAGTTTGTTGATGACGGTGATGTTAGATTGATTGGTGTTGAGGCTGCCGGCCTTGGTTTAGATAGTGGTAAACATGCAGCTACTTTGACAAAAGGTGAAGTTGGGGTTTTGCATGGAGCTATGAGTTACTTATTACAGGATGAAGATGGGCAAATAATCGAGCCTCATTCAATTAGTGCAGGCTTGGATTACCCTGGCGTCGGTCCAGAGCACAGTTTTTTGAAGGATGCAGGTCGTGCGGAATACTACTGCGTTACAGATGAAGAAGCATTGGAAGCATTCAAGAGATTATCCCGATTAGAGGGGCATAATCCCAGCTCTGGAGACATCTCATGCTTTGGCTTATTTGGAGAAGCTCTGCCCAACTCTGCCAAACGGCCTGAAAGTGGTGGTGAACTGCAGTGGGAGAGGAGACAAGGATGTTCAAACTGCAATCAAGCATTTACAGATTTTCTGGAAAAAGATTTCGACCCACAGGTTAAAAAAGCAACCTTTGATATGACTAGATTTAGAGTTTTGAGTCATCACGGAGAGTGCCCGTCTTTAGTTGTGGTGCTGTCGATTATAGAGGTCACGGAGGACGAGGACGAGAGTTGGACACTGTTAAAAACCCATCAATCTCTTCCACTTGTTCTGTCTTTCCGGGATGATTTCCTCCACCCCCTTAGCCTCACTGCTTTGCCTGCAAAAAACAATTGCACCATGTCAAACTCCGGTGTCATCTCCTCTTATCTACTACCCAGAAATCCGATACCAAAAAGGCGCAAGACAGAATTCACGTGCAGCACGTATTTGCATGTATGTGCATGTCATGCGCGTATGTGTATGCACACAGTTTTACTGGTGGGGGATGATGATGGGAAGGAGAGTTCAAACAAGTTAGGTGGGGCTTGGGAGGTTGGTCCAACAGCCGATTGA 1860 48.92 MAASSILASKTLPSSLSFPHSISQLPFEAERVAIRPSSLSRTASISCALTKDSSLEMEGKVSSVLSLRPDSFGRFGKFGGKYVPETLMHALTELETAFHQLAGDEDFQKELDGILKDYVGRESPLYFAERLTGHYRRPSGEGPHIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLGCIIYMGAQDMERQSLNVFRMRLLGAEVIAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRRQAMEKWGGKPDILVACVGGGSNAMGVFHEFVDDGDVRLIGVEAAGLGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDAGRAEYYCVTDEEALEAFKRLSRLEGHNPSSGDISCFGLFGEALPNSAKRPESGGELQWERRQGCSNCNQAFTDFLEKDFDPQVKKATFDMTRFRVLSHHGECPSLVVVLSIIEVTEDEDESWTLLKTHQSLPLVLSFRDDFLHPLSLTALPAKNNCTMSNSGVISSYLLPRNPIPKRRKTEFTCSTYLHVCACHARMCMHTVLLVGDDDGKESSNKLGGAWEVGPTAD 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22616027 22618864 + BLOR11756 Blo03g00575 58039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00575 619 ProSitePatterns Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 152 166 IPR006653 GO:0004834|GO:0006568
Blo03g00575 619 CDD Trp-synth_B 90 416 IPR006654 GO:0004834|GO:0006568
Blo03g00575 619 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 69 419 IPR036052 -
Blo03g00575 619 Pfam Pyridoxal-phosphate dependent enzyme 119 418 IPR001926 -
Blo03g00575 619 Hamap Tryptophan synthase beta chain [trpB]. 68 502 IPR023026 GO:0000162|GO:0004834
Blo03g00575 619 TIGRFAM trpB: tryptophan synthase, beta subunit 73 417 IPR006654 GO:0004834|GO:0006568
Blo03g00575 619 Gene3D - 120 420 IPR036052 -
Blo03g00575 619 PANTHER TRYPTOPHAN SYNTHASE BETA CHAIN 1, CHLOROPLASTIC-RELATED 18 420 - -
Blo03g00575 619 PANTHER TRYPTOPHAN SYNTHASE-RELATED 18 420 - -
Blo03g00575 619 Gene3D - 75 277 IPR036052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00575 K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] - csv:101220286 690.649
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g00575 Blo03g01443 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00575 Blo-Chr3:22616027 Blo11g00340 Blo-Chr11:2827163 3.52E-19 dispersed
Blo03g00575 Blo-Chr3:22616027 Blo03g01443 Blo-Chr3:41010955 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g472 Blo03g00575 Blo03g01443 Bda07g00347 Bda09g00390 . Bpe08g01133 . . . . Cma01g01141 . . . Sed07g2665 . Cpe02g00759 Bhi09g01922 Tan01g4526 Cmetu04g1540 . Hepe01g1295 Mch11g1169 . . . . . . . . Cone6ag0078 Cone9ag0093 . . Lsi04g01224 . . . . . . . Bpe11g00532 . . Bma14g00349 . Cmo01g01193 . . . . Car16g00553 . . . . . . . . . Cla05g01511 Cam05g1626 Cec05g1630 Cco05g1658 Clacu05g1611 Cmu05g1511 . . . . Cme04g00849
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008087 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00575 Blo_Chr03 FPKM 18.246672 20.627289 14.481639 13.096918 15.629966 17.476555 17.445683 15.817523 14.988878 17.583033