Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00582 ATGGGGATGACAATTGATGCTGTTCAGAAAAAGCAAGGAGGGCTGCCTCGATCAGGTCGGGCTAATGGGTTCATCTCTAGCTCATTTCGTGCCTTCTCAAGCTACCTGAGAATTGTCTCCTCCGGTGCTTCGACCGTGGCAAGGTCTGCTGCATCGGTAGCGTCATCAATTGTGGAGAAGGAAAATGACGCAAATTCTGATCAGGTAAATTGGGCTGGGTTTGGAAAGTTAGAGATTGAAGGAGATGTTGCCCGGCGAGTCCTTCTCTTGGGTTATCGGTCTGGTTTCCAAGTTTGGGATGTCGAAGAAGCCAACAATGTCCGAGACTTAGTTTCCAGAAATGATGGTCCTGTCTCATTCATGCAAATGTTACCAATCCCATTAAAATCAAAAAGATTGAGTGATAAGTTTGAAGATAGTCATCCATTGCTTGTTCTTTGTGCCAATGGGCCCATAAATGTTAATCCCAACCATCACGATCAATCAGCCAGTCAAGGAAAAATGGCAAATGGGAAGTCTCAAGACTTATCAAATGTTCGATTTTATTCATTTAAATTGCAATCTTATGTTCATGAGCTCAAGTTTCAGTCGATTGTTTATTCAATAAGATGCAGCTCCCGAGTTGTAGCCATTTCTCAAGTAACACAGATACACTGCTTAGATGCCTCTACATTGGAGAGGCAATATTCAATTCTAACAAATCCAATAGTCATGGGGTGTCCTAGTTTTGGAGGTATAGGATATGGACCTCTTGCTATAGGGCCAAGATGGTTAGCTTATAGTGGAATTTCAGTTGCAGTAACCAATCCAGGCCGTGTCAGTCCTCAACATCTGACGACTTCTGCAAGCTTTCCTAGCATTGCTTCGAATGGAGTCGGCCACTATGCGAAGGAATCAAGTAAGCAAGTTGCTCAAGGGCTGGCAACCCTTGGAGACATGGGATATAAGAAGCTCTCGAGATATTATTCAGAGCTTATCACGGACGGTAGTCATTCACTGCAATCGAAGGGCAATGGAGCTCTTAATGGGCATATGGGGGATGGAGATAGTGTTGGAATGGTCCTTGTACGGGATATAGTCAGCAAAGATGTCATCACCCAGTTCAGAGCGCACAAGAGTCCGATCTCGGCATTATGCTTTGATCCTAGTGGGACCCTTTTAGTGACTGCATCTGTTCAAGGGCATAACATAAATGTTTTTAAAATCATGCCCGGATTATCTGGAACTTCCTCTGCATCTTGTGCTCATCTCTACCGACTGCAGCGTGGTTTGACTAATGCAGTTATACAAGATGTTAATTTCAGCGATGATGGGAACTGGATTATGATCAGTTCCTCCAGAGGGACAAGCCATCTTTTTGCTATAAACCCAGTTGGTGGATCAGTGAATTTACAGTCTGAAAATGGTGGTTTAGGTTTTCCAACAAACCTACAAATTCGAAAGTTACAAAATTACGTCTCACAAATGCCTAACCAACAGAACCTTTTTGCAGCAAACCATCCATTGACACTTTCTGCTGTGAGTAGAATACATAATGGAAATGGCTGGAGAGGCACTGTTAGTGGGGCAGCAGCTGCCGCAACAGGCAGAGCAAGTCCCCTATCGGAGGCTATTGCTTCGTGTTTTCATAACTGCAAGAGTAATTTATTGCATGTCGATAATGGCTTGACAAAAGCTAAGTATCACCTTCTGGTTTTTTCCCCATCTGGTAGTATGATTCAATATGCATTACGAATTGGCTTAGATCAGACTGATGTTGTATCTGGTCTAAATGGTGCCTATGAATTGGCTACAGATGCTGATTCTAGGCTAGCAGTTGAGGCGATTCGAAAGTGGAATATATGCCAGAGGCAAAATCAAAGAGAGGGAGAAGATAACATGGATATATATGGTGATAATGGCTCGTATTGCAAGAAAGGATATACTGAAGAAACAAATGGAAGTCCGCATTTTTCAGAAGATAGCAGTTCAATCACAGAAGAAAAGCACCAGTTGTATATTTCAGAAGCTGAGTTGCAGATGCATCAAGCTCTAAGTCCGTTGTGGGCTAAACCTGAGATCTACTTCCAATCGATTATGAATGATAATCTTGGAGTAGGTGAAAAAAATCTTTTGAGCGAGGAAATGGAGATTGAAATAATACCGACACTCTTGATCAAAGCACGGCCAAAAGATCTGGTTCCTGTCTTTGACCATCTTCCATCTCCCAAACCAAAACAAATCAGATTTGAGCTCCTATTCTCTAGCACAAATTACTCGAAGATTTTATCTACGGATGCCAATATTACTCGACCACCACAGCAGAAGTCTGATCCTCCTGACAATGGAAAGCATCCATGTAGGAGTTTTACATGTTCTCATGACTCTGCTTCTGTGAATGGCGTAGTGTCACGATCTTACTTTCAAGAGACTTAA 2415 42.57 MGMTIDAVQKKQGGLPRSGRANGFISSSFRAFSSYLRIVSSGASTVARSAASVASSIVEKENDANSDQVNWAGFGKLEIEGDVARRVLLLGYRSGFQVWDVEEANNVRDLVSRNDGPVSFMQMLPIPLKSKRLSDKFEDSHPLLVLCANGPINVNPNHHDQSASQGKMANGKSQDLSNVRFYSFKLQSYVHELKFQSIVYSIRCSSRVVAISQVTQIHCLDASTLERQYSILTNPIVMGCPSFGGIGYGPLAIGPRWLAYSGISVAVTNPGRVSPQHLTTSASFPSIASNGVGHYAKESSKQVAQGLATLGDMGYKKLSRYYSELITDGSHSLQSKGNGALNGHMGDGDSVGMVLVRDIVSKDVITQFRAHKSPISALCFDPSGTLLVTASVQGHNINVFKIMPGLSGTSSASCAHLYRLQRGLTNAVIQDVNFSDDGNWIMISSSRGTSHLFAINPVGGSVNLQSENGGLGFPTNLQIRKLQNYVSQMPNQQNLFAANHPLTLSAVSRIHNGNGWRGTVSGAAAAATGRASPLSEAIASCFHNCKSNLLHVDNGLTKAKYHLLVFSPSGSMIQYALRIGLDQTDVVSGLNGAYELATDADSRLAVEAIRKWNICQRQNQREGEDNMDIYGDNGSYCKKGYTEETNGSPHFSEDSSSITEEKHQLYISEAELQMHQALSPLWAKPEIYFQSIMNDNLGVGEKNLLSEEMEIEIIPTLLIKARPKDLVPVFDHLPSPKPKQIRFELLFSSTNYSKILSTDANITRPPQQKSDPPDNGKHPCRSFTCSHDSASVNGVVSRSYFQET 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22835880 22839445 + BLOR11763 Blo03g00582 58046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00582 804 Pfam WD domain, G-beta repeat 365 394 IPR001680 GO:0005515
Blo03g00582 804 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 17 791 - -
Blo03g00582 804 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 17 791 IPR045142 GO:0006914
Blo03g00582 804 Pfam Breast carcinoma amplified sequence 3 500 728 IPR022175 -
Blo03g00582 804 SUPERFAMILY WD40 repeat-like 88 456 IPR036322 GO:0005515
Blo03g00582 804 Gene3D - 345 501 IPR015943 GO:0005515
Blo03g00582 804 MobiDBLite consensus disorder prediction 758 783 - -
Blo03g00582 804 SMART WD40_4 361 401 IPR001680 GO:0005515
Blo03g00582 804 SMART WD40_4 411 454 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00582 - - - qlo:115955563 914.064
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g00582 Blo03g01436 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00582 Blo-Chr3:22835880 Blo18g00598 Blo-Chr18:9225980 2.08E-165 dispersed
Blo03g00582 Blo-Chr3:22835880 Blo03g01436 Blo-Chr3:40928437 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g430 Blo03g00582 Blo03g01436 . . . . . . . . . Cma09g00926 . Car09g00841 . Cpe06g00745 . . . . . . . . . . . . . . . Cone6ag0088 Cone9ag0103 . . . . . . . . . . Bpe11g00525 . . . . . . . . . Car16g00563 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005697 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00582 Blo_Chr03 FPKM 8.756364 8.746242 15.14075 17.069944 8.98376 9.400929 8.145292 34.872772 35.743526 34.870174