Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00584 ATGGTTGGGACGGAAGCTAATGGAAGAACACGGCTGGCGTTTTCAGTCGTCAATGGCGGACAAAACGGGTGTCTGAACAGCACTCCAACAAGCATTGCCGGCTCCGAGTGCGGTGGCGTAGAGTTCTCCAGAGAAGACGTTGAAGCTTTGTTGAATGAAAAATTGAAAAGAAAAGACAGATTCAATCTCAAGGTCAGTACTTTTACAGCATTGAAGGAAAAATGTGACAACATGGCTGAATACATTAAAAGGCTTAAATTATGCATCAAATGGTTTCAAGATCTTGAATCTGCCTATTTATTAGAGCAAGAGAAGTTGCATGATCGATTCGAATCAGCTGAGCTGAAATGCTCCGAAATGGAGATATTATTGGAGAATAAGGAAGAAGAGTTAAATTCAATCATCATCGAGCTTAGAAAGAGCTTCGAGTGTTTGCAAGAGAAGTTTACGAAAGAAGAATCAGATAAGTTGGTTGCAATGGACTCTCTAGCGAAAGAGAAAGAGGCTAGACAGAATATTGAGAGGTCACAGGCCTCCCTCTTGGAAGAACTTGGTAGGGCCCAAAGAGATCTTTTGAGTGCAAATCAGAAGATTACATCACTTAATGATATGTACAAGCGATTACAAGAGTACATCACGAGTTTACAACAATATAATGGAAAACTTCATACAGAGCTGTCCACAGTCGAAGACAACCTGAAGCAAATAGAGAAAGAGAAGGCTTCAATGGTGGAAAATCTCAGCTTGTTAAAGGGTCAACTTACTTTGTCCAAAGCTTCTCATGATGAGGCGGTGATGCAAAAAGAAGCGATGGTGGATGAAGCTTCGTGTCTAAGGCGAGAATTACAGCAAGTGAGGAACGAACGAGATTGTCAACTTTCACAGGTTCAGTCGTTGACAGTTGAAGTCGTGAAGTACAAAGAGAGTGCAGAAATGTGCAATTGTGAGCTGGAAATTTTGAAAACTATGACAAGTGAATTAGAGGCAACATGTTCTTGGCAAAACGACGAGCTAAAGGCCTTGAATAATCATCTATCTGCTGCAGAAAGCAAACTCCAGGTGTCTGATTTATCTGCAATGGCAACAAGGGCAGAGTTTGAAGAGCAAAAGAGACTTATAATTGAGTTACAAAATCGTTTGGATGATTCAGAAATGAAGCTTACGGAAGGAGAGAAGTTGCGAAAAAAGTTGCATAATACCATATTGGAACTTAAGGGAAATATTCGAGTGTTCTGTAGAGTTCGCCCGTTAATACCCGAAGATGGTTTTTGCTCCGAAGGAAAAATTTTCTCCTATCCCTCGTCAGTTGAAGCCCTTGGACGAGGAGTTGACGTAAAGCAAAATGGCCAGAGACATTCTTTTACATTTGATAAAGTATTTATGCCCACGTCAACCCAAGAGGACGTGTTTGTGGAAATTTCGCAACTTGTACAAAGTGCGCTTGATGGTTATAAGGTTTGCATTTTTGCTTATGGACAAACTGGATCGGGCAAGACCTACACAATGATGGGTGGGCCCAACCTCAAAGAACTAAAAGGGTTGATACCTCGATCGTTAGAACAAATATTTCAAACGAGACAATCTCTTCAACCTCAGGGTTGGAAATACGAAATGCAGGTGTCGATGCTGGAAATCTATAATGAAAACATTCGTGATTTACTCGGGGTTCATCGATCGTATTCGGATTCTTCACAACTTGAGAATGGTAGTCCTGGAAAGCAATATGCGATCAAACACGACATAAGTGGAAACACGCATGTCTCTGAACTTACGGTCGTGGATGTTCATAGCGTGAAAGAGGTCTCATTTCTCTTAGATCAAGCTGCTCGAAGCAGATCTGTTGGGAAAACCCAAATGAATGAGCAATCTTCAAGAAGTCATTTTGTGTTCACTCTTCGAATATTCGGAGTAAACGAGAGCACCGATCAACAAGTACAAGGCGTTTTGAATCTGATTGATCTTGCCGGGAGCGAACGACTTTCGAAGAGCGGATCGACTGGGGAGCGATTGAAAGAAACTCAAGCTATTAATAAAAGTCTGTCATCTTTAAGTGATGTTATATTTGCTTTGGCAAAGAAGGAAGAGCATGTGCCATTTAGAAACTCAAAACTTACATATCTTCTTCAGCCGAGTCTCGGTGGCGATTCGAAGACATTGATGTTTGTAAATATCTCTCCTGACCCTTCTTCGCTCGGTGAATCTCTATGCTCTCTCCGCTTTGCCGCTCGTGTTAATGCTTGCGAAATCGGAACTCCTCGCCGTCAAACAAGTTCGCGCTGA 2280 41.8 MVGTEANGRTRLAFSVVNGGQNGCLNSTPTSIAGSECGGVEFSREDVEALLNEKLKRKDRFNLKVSTFTALKEKCDNMAEYIKRLKLCIKWFQDLESAYLLEQEKLHDRFESAELKCSEMEILLENKEEELNSIIIELRKSFECLQEKFTKEESDKLVAMDSLAKEKEARQNIERSQASLLEELGRAQRDLLSANQKITSLNDMYKRLQEYITSLQQYNGKLHTELSTVEDNLKQIEKEKASMVENLSLLKGQLTLSKASHDEAVMQKEAMVDEASCLRRELQQVRNERDCQLSQVQSLTVEVVKYKESAEMCNCELEILKTMTSELEATCSWQNDELKALNNHLSAAESKLQVSDLSAMATRAEFEEQKRLIIELQNRLDDSEMKLTEGEKLRKKLHNTILELKGNIRVFCRVRPLIPEDGFCSEGKIFSYPSSVEALGRGVDVKQNGQRHSFTFDKVFMPTSTQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGGPNLKELKGLIPRSLEQIFQTRQSLQPQGWKYEMQVSMLEIYNENIRDLLGVHRSYSDSSQLENGSPGKQYAIKHDISGNTHVSELTVVDVHSVKEVSFLLDQAARSRSVGKTQMNEQSSRSHFVFTLRIFGVNESTDQQVQGVLNLIDLAGSERLSKSGSTGERLKETQAINKSLSSLSDVIFALAKKEEHVPFRNSKLTYLLQPSLGGDSKTLMFVNISPDPSSLGESLCSLRFAARVNACEIGTPRRQTSSR 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22901936 22906001 - BLOR11765 Blo03g00584 58048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00584 759 PRINTS Kinesin heavy chain signature 697 718 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo03g00584 759 PRINTS Kinesin heavy chain signature 483 504 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo03g00584 759 PRINTS Kinesin heavy chain signature 648 666 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo03g00584 759 PRINTS Kinesin heavy chain signature 617 634 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo03g00584 759 PANTHER KINESIN-LIKE PROTEIN KLP-3 4 759 - -
Blo03g00584 759 Coils Coil 110 137 - -
Blo03g00584 759 ProSitePatterns Kinesin motor domain signature. 647 658 IPR019821 GO:0003777|GO:0005524|GO:0007018
Blo03g00584 759 Coils Coil 163 190 - -
Blo03g00584 759 Pfam Kinesin motor domain 413 745 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo03g00584 759 Coils Coil 359 393 - -
Blo03g00584 759 CDD KISc_C_terminal 405 749 - -
Blo03g00584 759 ProSiteProfiles Kinesin motor domain profile. 407 747 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo03g00584 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 745 IPR027417 -
Blo03g00584 759 SMART kinesin_4 405 755 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo03g00584 759 PANTHER KINESIN-LIKE PROTEIN 4 759 - -
Blo03g00584 759 Coils Coil 268 295 - -
Blo03g00584 759 Coils Coil 219 253 - -
Blo03g00584 759 Gene3D Kinesin motor domain 347 749 IPR036961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00584 K10405 KIFC1; kinesin family member C1 - qsu:112027380 1120.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00584 Blo-Chr3:22901936 Blo08g00166 Blo-Chr8:1909684 0 dispersed
Blo05g00525 Blo-Chr5:9642900 Blo03g00584 Blo-Chr3:22901936 6.21E-78 dispersed
Blo06g00185 Blo-Chr6:7767998 Blo03g00584 Blo-Chr3:22901936 3.26E-79 dispersed
Blo03g00584 Blo-Chr3:22901936 Blo14g00340 Blo-Chr14:3639275 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g417 Blo03g00584 . Bda07g00337 . . . . . . . Cma01g01154 Cma09g00922 . Car09g00838 . Cpe06g00742 Cpe02g00747 Bhi09g01950 . . . . . . . . . . . . . Cone6ag0089 Cone9ag0105 . . Lsi04g01248 . . . . . . . Bpe11g00523 . . Bma14g00358 . Cmo01g01207 Cmo09g00919 . . . Car16g00566 . . . . . . . . . Cla05g01542 Cam05g1650 Cec05g1655 Cco05g1694 Clacu05g1643 Cmu05g1538 Cre05g1648 . . . Cme04g00801
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006975 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00584 Blo_Chr03 FPKM 1.577922 1.328594 2.156305 2.911521 4.220429 2.571064 4.641583 7.242456 9.310051 9.314229