Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00604 ATGAACTCCACAAAATGGTATAAAAGCCAAAACTCATCCGGAAGTGTGGCCGACGAGGACGTTAGGTCTCCAAGGAGAAGAAATTGTGACAGTCTGCCATGTGATAGTAAGGATGACCCAAGTGAGAGTTTGACTCATACTAGTGGAAGTGAACAATCCTACATCGCTTGGGAGAGTGGAAAATCACCAAAACTCTCTGGGGCTTTTCCTGAAACCTTGAGCTGTACAATGCCTCCCACCGTCTCAAATGCTCCATCTTCTCCAAATGTTGTTCGGCAAACAGCAGCATACGAGCCGAGTATTTGGGGAGATGGCTTTCTCAACTACGAATTCGAACCATGGGAAAAGTATGCCCTTATGGAGAAGGAGGTAGAAGAATTGAAGAAGGGCGTGAGGAAGATGCTGTCAGAGAGTGCAAGTGATTCTTTTGATCAACTTAAACTAATTGATGACATTCAGCGGCTGGGCGTGGAGTATCATTTTGAAAAAGAGATCGAGGATGCTTTAGAATTCGTATATGATACCTATCTCAATGAAGGCCTCAAACGTAATGTCAGCCTCCATCACGTTGCTTTGCGTTTCCGATTGCTCAGACAGCAAGGCCTTAACATTTCATGTGACACTTTGAACCCTTGGAGAGATGGAGAAGGAAAGTTTAAAGAGCTCTTAGCCACAGACGTGGAAGGATTGCTGAGCCTTTATGAGGCTTCATTTTTGGGTTTGCAAGAAGAAACTTTGCTGGATGAGGCTCTTGTCTTCTCCACTACTCACCTTGAAGTCTTATCAAAGCAAGAAAGCTACCCTCTTTCAGACATGATATCTAGAGCCCTTAGTTGTCCGTTGTGGAAGAGGATAGTGAGAGTAAATGCTGCTCATTTCATCTCTATCTATAAAGACCTACCTTCCCATAACGAAATCTTGCTAAGATTTGCGAAGCTAGATTATAATCTACTTCAATCTCTTCACAAGAAGGAGCTCAGTGACTTACGCAAATGGGAAAGAGGCCTGGACTTTGCTAGAAAACTGCCATTTGCAAGGGATAGGAACGTGGAGTGTTGTTATTGGGTATTTGGAGCTCACTTTGAACCTCAATACTTTCTATCGAGAAGAATTTTAAGTAAAGTTCTTTATTTGACTTCATATCTTGATGATATTTATGATGCTTACGGTACAATGCAAGAACTCACCCTCTTTACGTCAGCAATCAGAAGTTGGAGTGGTGACAAAATGAATGAACTTCCTGAGTACATGCAAGTATGTTATCAAGCGTTGTTGGATTGTTTCGAAGAAATTAAAGAATATATGATCAAGCAAAGAACTTCTTATCGTTACTTCTACGCAAAAGAAGCTATGATCAAGCATCTTGGATACTACTATGTAGAAGCGGAATGGCTGGACAAGAAATATAAGCCAACATTTGATGAATACATAGGCTTGGCTACAAAGTCAATTTGCTATGCTTTGCTTTCCACAATCTCCTTTGCAGGAATGACTTCTGATGTTGCTAAGAAAGATGACTTTGAATGGCTGGTCAGTGAACCTAAGTTTCTTAAAGCCGCAGAGTTGATTTGCAGGCTACTTGATGACTTAGTTTCCAGCAAGTTGGAGAAGCAACGAGAGCACATACCAACTTTTGTGGAGTGTTATACAAACCAGTACAAAGTATCTGAAAACGAAACCATCACTATATTAAAGAAAAATATTTCAAGTTCATGGAAGGATTTAAACAAAGAGATTATGAAGCCATCAGCTGTGTCAAGACCTCTATTTACTAGGATTCTTCATCTGGTTCGAGTTATGGAAGAACTGTATAAAGAAGAAGACGCCTATACCAATGTCGGAGAAATACTTCAAGATGGGATTTCCGCCATGTTCGTGAATGCATTTCCTATATGA 1896 40.77 MNSTKWYKSQNSSGSVADEDVRSPRRRNCDSLPCDSKDDPSESLTHTSGSEQSYIAWESGKSPKLSGAFPETLSCTMPPTVSNAPSSPNVVRQTAAYEPSIWGDGFLNYEFEPWEKYALMEKEVEELKKGVRKMLSESASDSFDQLKLIDDIQRLGVEYHFEKEIEDALEFVYDTYLNEGLKRNVSLHHVALRFRLLRQQGLNISCDTLNPWRDGEGKFKELLATDVEGLLSLYEASFLGLQEETLLDEALVFSTTHLEVLSKQESYPLSDMISRALSCPLWKRIVRVNAAHFISIYKDLPSHNEILLRFAKLDYNLLQSLHKKELSDLRKWERGLDFARKLPFARDRNVECCYWVFGAHFEPQYFLSRRILSKVLYLTSYLDDIYDAYGTMQELTLFTSAIRSWSGDKMNELPEYMQVCYQALLDCFEEIKEYMIKQRTSYRYFYAKEAMIKHLGYYYVEAEWLDKKYKPTFDEYIGLATKSICYALLSTISFAGMTSDVAKKDDFEWLVSEPKFLKAAELICRLLDDLVSSKLEKQREHIPTFVECYTNQYKVSENETITILKKNISSSWKDLNKEIMKPSAVSRPLFTRILHLVRVMEELYKEEDAYTNVGEILQDGISAMFVNAFPI 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24067007 24069941 + BLOR11785 Blo03g00604 58068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00604 631 PANTHER TERPENE SYNTHASE 2-RELATED 53 618 - -
Blo03g00604 631 SUPERFAMILY Terpenoid synthases 303 630 IPR008949 -
Blo03g00604 631 MobiDBLite consensus disorder prediction 19 44 - -
Blo03g00604 631 Gene3D Farnesyl Diphosphate Synthase 99 617 IPR008949 -
Blo03g00604 631 MobiDBLite consensus disorder prediction 1 18 - -
Blo03g00604 631 Pfam Terpene synthase family, metal binding domain 308 574 IPR005630 GO:0000287|GO:0010333|GO:0016829
Blo03g00604 631 PANTHER OS04G0344100 PROTEIN-RELATED 53 618 - -
Blo03g00604 631 SFLD Terpene Cyclase Like 1 C Terminal Domain 303 622 IPR034741 -
Blo03g00604 631 MobiDBLite consensus disorder prediction 1 53 - -
Blo03g00604 631 CDD Terpene_cyclase_plant_C1 92 627 IPR044814 GO:0010333|GO:0016102
Blo03g00604 631 Gene3D - 140 303 IPR036965 GO:0010333|GO:0016829
Blo03g00604 631 Pfam Terpene synthase, N-terminal domain 102 277 IPR001906 GO:0010333|GO:0016829
Blo03g00604 631 Coils Coil 117 137 - -
Blo03g00604 631 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 99 300 IPR008930 -
Blo03g00604 631 SFLD Isoprenoid Synthase Type I 303 622 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00604 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K14183 vvi:100257265 541.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00604 Blo-Chr3:24067007 Blo19g00082 Blo-Chr19:2017973 0 dispersed
Blo03g00603 Blo-Chr3:24064019 Blo03g00604 Blo-Chr3:24067007 0 tandem
Blo03g00604 Blo-Chr3:24067007 Blo03g00605 Blo-Chr3:24251974 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g400 Blo03g00604 . Bda07g00326 . . . . Bma13g00962 . . . . . . . . . . . . . . . . Cla10g00585 Cam10g0569 Cec10g0603 Cco10g0579 Clacu10g0605 Cmu10g1417 Cre10g0818 . . . . . Csa03g00574 . Cme06g02685 . . . . . . . . Sed06g0194 . . . Cma16g00826 . . . . Bhi11g00692 Tan01g1636 Cmetu06g2161 . . Mch10g1155 . . . . . . . . Lsi05g00660 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013164 2 0 21 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00604 Blo_Chr03 FPKM 13.091041 12.000278 11.208304 14.198966 19.980257 18.110714 22.114735 15.284998 13.250064 14.395262