Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00605 ATGGCTTCCCCCATCTCAAACGGTCAATCTTCTCATATTGTTGTTCGAGAAACAGCTGTATATGAGCCGAGTATTTGGGGAGATTGCTTTCTCAACTATGAGTTTGATACATTGGAAAATCACGTACTGACAAAGGAGATAGAAGAATTGAAGAAGGATGTGAGGAAGATGCTATCAAAGAGTCCGATTGATTCTCTTGATCAGTTAAAGCTCATTGATGATATTCAACGTCTTGGCGTGGAACACCATTTTACAAGAGAGATTGAGGATGCTTTGAAATGCAGATATACTACCTATCTTTACGGAGACTTTAAAAATAATTTCAGTCTCCATCACGTTTCTTTGCGTTTTCGATTGCTCAGACAACAAGGACTCAACATTTCATGTGGATTGCTAAGCCTCTATGAAGCTACATTTTTGGGTACAAGAGAAGAAACTGTGTTGGATGAGGCTCTTGTCTTCTCCACTGCTCACCTTGAAGCCTTACTGAAGCACGAAAGTTACACACTTTCAGACATGATATCTAGAACCCTTAGTTGTCCTTTGTGGAAGAGCATCGTGAGAGTAAATGCTGCTCATTTCATCTCTATCTACAAATACCTTCCTTCCTATAATGAAATCTTGTTAAGATTCGCAAAGCTTGATTACAATCTACTTCAATCTCTGCACAAGAAGGAGCTTAGCGACTTATGCAAATGGAAAAGAGGCCTAGACTTTGCTAGAAAACTACCATTTGGGAGGGACAAGATGGTGGAGTGCTGTTATTGGACATTTGTAGCCCACCTTGAACCGCAGTACAGTTTATCGAGGAGAATTACATCTAAAGTTGTTTATTTGACTACAGTAATTGATGATCTTTATGATGCTTATGGTACATTTCAAGAACTCACGCTCTTTACGTCTGCAATCAGAAGAATGAGTGAACTTCCGGAATACATGCAAATATGTTATCAAGCATTGTTAGATTTTTTCAAAGAAATTGAAGAAGAAATGATCAAACAAGGAATCTCCTATCGTTTCTCCTACGCAAAAGAAGCTATGATTAAGCAGATCGAATCCTACTATGAAGAAGCAAAATGGCTGGACAAGAAATATAAGCCAACATTCGATGAATACATAAGTGAAAATCACGAATTGACAAAGGAGATAGCAGAATTGAAGAAGGATGTGAGGAAAATGCTATGGAAGAGTTCAAGTGATTCTCTGAATCAGTTGAAGCTCATTGATGATATTCAGCGTCTTGGTGTGGAACACCATTTTACAAAAGAGATTGAGGATGATTTGGAATGCATATATGCTGCCTATCTCGATGAAAGCCTTGAAGATAATGTCAATCTCCATCATGTTTCTTTGCGTTTTCGATTGCTCAGACAACAAGGATTAAACATTTCATGTGACACTTTGGACCCATTTAGAGATGGAAACAAAAAGTTTAAAGATCACTTAGCTGCAGACGTGGAAGGATTGCTAAGCCTCTATGAAGCTACATTTTTGGGTACAAGAGAAGAAACTGTGTTGGATGAGGCTCTTGTCTTTTCCACTGCTCACCTCGAAGCCTTACTGAAGCACGAAAGTTACCCTCTTTCAGACATGATATCTAGAGCCCTTAGTTGTCCTTTGTGGAAGAGCATCGTGAGAGTAAATGCTGCTCATTTCATCTCTATCTACAAAGACCTTCCTTCCTACAATGAAATCTTGTTAAGATTCGCAAAGCTTGATTACAATCTACTTCAATCTCTGCACAAGAAGGAGCTTAGCGACTTATGCAAATGGAAAAGAGGCCTAGATTTTGCTAGAAAACTACCATTTGCAAGGGACAGGATGGTGGAGTGCTGTTATTGGACATTTGTATCCCACATTGAACCGCAGTACAGTTTATCGAGGAGAATTACATCTAAAGTTGTTTATTTGACTACAGTAATTGATGATATTTATGATGCTTATGGTACATTTCAAGAACTCACGCTCTTTACGTCTGCAATCAGAAGTTGGAGTGGTGATAGAATGAGTGAACTTCCGGAATACATGCAAATATGTTATCAAGCATTGTTAGATTTTTTCAAAGAAATTGAAGAAGAAATGATCAAACAAGGAATCTCCTATCGTTTCTCCTACGCAAAAGAAGCTATGATTAAGCAGATCGAATCCTACTATGAAGAAGCAAAATGGCTGGACAAGAAATATAAGCCAACGTTCGATGAATACATAAGTGTAGCTTCAACGTCATTCGGCTATGCTTTGCTTTTGACAATCGCTTTTGCCGGAATGAGTTATGGGGCTGTTAAGAAAGATGACTTTGACTGGCTGGTCAGTGAACCTAAGTTTCTCAAAGCTGCGGAGTTAATTTGCAGGCTACTTGATGACTTAGTTTCCAGCAAGCTTGAGAAACAACGAACGCACATACCAACATCTGTGGAATGCTTTACATATCAATACAAGGTATCTGAAGAAGATGCTGTCATTGCATTAAAGAAGAAGATTTCAGATTCATGGAAGGATTTAAACAAAGAAATTATGAAGTCAACAGCTGTGTCGAGACCTCTTTTAATTACGGTTCTTCATCATGTTCGATCCGTGGAAGAGATCTATAAGGAAGAAGATACATATACCAGTAACGGAAAGCGTCTTCAAGACGGAATCTCTATCATGTTTGGCGATGCATTTTCTCTTTGA 2673 38.57 MASPISNGQSSHIVVRETAVYEPSIWGDCFLNYEFDTLENHVLTKEIEELKKDVRKMLSKSPIDSLDQLKLIDDIQRLGVEHHFTREIEDALKCRYTTYLYGDFKNNFSLHHVSLRFRLLRQQGLNISCGLLSLYEATFLGTREETVLDEALVFSTAHLEALLKHESYTLSDMISRTLSCPLWKSIVRVNAAHFISIYKYLPSYNEILLRFAKLDYNLLQSLHKKELSDLCKWKRGLDFARKLPFGRDKMVECCYWTFVAHLEPQYSLSRRITSKVVYLTTVIDDLYDAYGTFQELTLFTSAIRRMSELPEYMQICYQALLDFFKEIEEEMIKQGISYRFSYAKEAMIKQIESYYEEAKWLDKKYKPTFDEYISENHELTKEIAELKKDVRKMLWKSSSDSLNQLKLIDDIQRLGVEHHFTKEIEDDLECIYAAYLDESLEDNVNLHHVSLRFRLLRQQGLNISCDTLDPFRDGNKKFKDHLAADVEGLLSLYEATFLGTREETVLDEALVFSTAHLEALLKHESYPLSDMISRALSCPLWKSIVRVNAAHFISIYKDLPSYNEILLRFAKLDYNLLQSLHKKELSDLCKWKRGLDFARKLPFARDRMVECCYWTFVSHIEPQYSLSRRITSKVVYLTTVIDDIYDAYGTFQELTLFTSAIRSWSGDRMSELPEYMQICYQALLDFFKEIEEEMIKQGISYRFSYAKEAMIKQIESYYEEAKWLDKKYKPTFDEYISVASTSFGYALLLTIAFAGMSYGAVKKDDFDWLVSEPKFLKAAELICRLLDDLVSSKLEKQRTHIPTSVECFTYQYKVSEEDAVIALKKKISDSWKDLNKEIMKSTAVSRPLLITVLHHVRSVEEIYKEEDTYTSNGKRLQDGISIMFGDAFSL 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24251974 24256961 + BLOR11786 Blo03g00605 58069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00605 890 Gene3D - 131 203 IPR036965 GO:0010333|GO:0016829
Blo03g00605 890 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 375 558 IPR008930 -
Blo03g00605 890 CDD Terpene_cyclase_plant_C1 368 884 IPR044814 GO:0010333|GO:0016102
Blo03g00605 890 Coils Coil 369 396 - -
Blo03g00605 890 SUPERFAMILY Terpenoid synthases 563 886 IPR008949 -
Blo03g00605 890 Coils Coil 40 60 - -
Blo03g00605 890 PANTHER OS04G0344100 PROTEIN-RELATED 12 129 - -
Blo03g00605 890 PANTHER OS04G0344100 PROTEIN-RELATED 130 373 - -
Blo03g00605 890 Gene3D Farnesyl Diphosphate Synthase 377 877 IPR008949 -
Blo03g00605 890 PANTHER OS04G0344100 PROTEIN-RELATED 379 869 - -
Blo03g00605 890 SFLD Isoprenoid Synthase Type I 563 878 - -
Blo03g00605 890 Gene3D - 399 562 IPR036965 GO:0010333|GO:0016829
Blo03g00605 890 Gene3D Farnesyl Diphosphate Synthase 204 375 IPR008949 -
Blo03g00605 890 PANTHER TERPENE SYNTHASE 2-RELATED 379 869 - -
Blo03g00605 890 PANTHER TERPENE SYNTHASE 2-RELATED 12 129 - -
Blo03g00605 890 Pfam Terpene synthase, N-terminal domain 370 536 IPR001906 GO:0010333|GO:0016829
Blo03g00605 890 Pfam Terpene synthase, N-terminal domain 25 130 IPR001906 GO:0010333|GO:0016829
Blo03g00605 890 Gene3D - 26 130 IPR036965 GO:0010333|GO:0016829
Blo03g00605 890 SUPERFAMILY Terpenoid synthases 205 396 IPR008949 -
Blo03g00605 890 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 23 200 IPR008930 -
Blo03g00605 890 SFLD Terpene Cyclase Like 1 C Terminal Domain 563 878 IPR034741 -
Blo03g00605 890 Pfam Terpene synthase family, metal binding domain 567 833 IPR005630 GO:0000287|GO:0010333|GO:0016829
Blo03g00605 890 Pfam Terpene synthase family, metal binding domain 209 374 IPR005630 GO:0000287|GO:0010333|GO:0016829
Blo03g00605 890 SFLD Terpene Cyclase Like 1 N-term 398 561 - -
Blo03g00605 890 PANTHER TERPENE SYNTHASE 2-RELATED 130 373 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00605 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K14183 cit:102608621 718.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00602 Blo-Chr3:24010640 Blo03g00605 Blo-Chr3:24251974 3.10E-164 dispersed
Blo03g00603 Blo-Chr3:24064019 Blo03g00605 Blo-Chr3:24251974 0 dispersed
Blo03g00605 Blo-Chr3:24251974 Blo03g00607 Blo-Chr3:24551158 0 dispersed
Blo10g00815 Blo-Chr10:25865528 Blo03g00605 Blo-Chr3:24251974 3.48E-143 dispersed
Blo03g00604 Blo-Chr3:24067007 Blo03g00605 Blo-Chr3:24251974 0 tandem
Blo03g00605 Blo-Chr3:24251974 Blo03g00606 Blo-Chr3:24418534 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g399 Blo03g00605 . . . . . . . . . . . . . . . . . . . . . . . Cla10g00587 Cam10g0572 Cec10g0605 Cco10g0581 Clacu10g0606 Cmu10g1418 Cre10g0819 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi11g00693 Tan01g1634 . . Hepe07g0540 Mch10g1151 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013164 2 0 21 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00605 Blo_Chr03 FPKM 10.379054 9.646442 8.173767 9.211903 3.305973 3.586937 3.663249 6.626985 6.694072 6.591355