Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00606 ATGGCTTCCCCCATCTCAAACGGTCAATCTTCTCATATTGTTGTTCGAGAAACAGCTGTATATGAGACGAGTATTTGGGGAGATCGCTTTCTCAACTATGAGTTTGATACATTGGAAAATCACGTACTGACAAAGGAGATAGAAGAATTGAAGAAGGATGTGAGGAAGATGCTATCAAAGAGTCCGAGTGATTCTCTTGATCAGTTAAAGCTCATTGATCATATTCAACGTCTTGGCGTTGAACACCATTTTACAAGAGAGATTGAGGATGCTTTGGAATGCATATATACAACCTATCTTTACGGAGACTTTAAAAAAAATTTCAATCTCCATCATGTTTCTTTGCATTTTCGATTGCTCAGACAACAAGGACTCAACATTTCATGTGACACTTTGGACCCATTTCGAGATGGAAACAGAAAGTTTAAAGATCACTTAGCTACCGACGTGGAAGGATTGCTAAGCCTCTATGAAGCTACATTTTTAGGTACAAGAGAAGAAACTGTGTTGGATGAGGCTCTTGTCTTCTCCACTGCTCACCTCGAAGCCTTACTGAAGCACGAAAGTTACCCACTTTCAGACATGATATCTAGAGCCCTTAGTTGTCCTTTGTGGAAGAGCATTGTGAGAGTAAATGCTGCTCATTTCATCTCTATCTACAAATACCTTCCTTCCTACAATGAAATCTTGTTAAGATTCGCAAAGCTTGATTACAATCTACTTCAATCTCTGCACAAGGAGAAGCTTAGCGACTTATGCAAATGGAAAAGAGGCCTAGACTTTGCTAGAAAACTACCATTTGCGAGGGACAGGATGGTGGAGTGCTGTTATTGGACATTTGTAGCCCACGTTGAACCGCAGTACAGTTTATCGAGGAGAATTACATCTAAAGTTATTTATTTGACTACAGTAATTGATGATATTTATGATGCTTATGGTACATTTCAAGAACTCACGCTTTTTACGTCTGCAATCAGAAGTTGGAGTGGTGATAGAATGAGTGAACTTCTAGAATACATGCAAATATGTTATCAAGCATTGTTAGATTTTTTCAAAGAAATTGAAGAAGACATGACCAAACAAGGAACCTCCTACCGTTACTCCTATGCAAAAGAAGTTATGATTAAGCAGGTCGAATCCTACTATGAAGAAGCAAAATGGCTGGATAAGAAATATAAGCCAACGTTTGATGAATACATAAGTGTAGCTTCAAAGTCATTCGGCTATGCTTTGCTTTTGACAATCGCTTTTGCCGGAATGAGTTATGGGGCTGCTAAGAAAGATGACTTTGACTGGCTGGTCAGTGAACCTAAGTTTCTCAAAGTAGTGGAGTTAATTTGCAGGCTACTTGATGACTTAGTTTCTAGCAAGTTGGAGAAACAACGAGGTCATATACCAACATTAGTGGAATGCTATTCAAACCAGTACAAAGTATCTGAAGAAGAGGCTATCATTGCATTAAAGAAGAAGATATCAGATTCATGGAAGGATTTAAACAAAGAAATTATAAAGCCAACAACTATGTCGAGGCCTCTTTTAATTTTGGTTCTTCTTCTTGTTCGATCCGTGGAAGAGCTCTACAAGGAAGAAGATGCATATACCAATAACGTAAAGCATCTTCAAGACGGAATCTTTGCTATGTTTGGCGATGCATTTTCTCTTTGA 1665 38.44 MASPISNGQSSHIVVRETAVYETSIWGDRFLNYEFDTLENHVLTKEIEELKKDVRKMLSKSPSDSLDQLKLIDHIQRLGVEHHFTREIEDALECIYTTYLYGDFKKNFNLHHVSLHFRLLRQQGLNISCDTLDPFRDGNRKFKDHLATDVEGLLSLYEATFLGTREETVLDEALVFSTAHLEALLKHESYPLSDMISRALSCPLWKSIVRVNAAHFISIYKYLPSYNEILLRFAKLDYNLLQSLHKEKLSDLCKWKRGLDFARKLPFARDRMVECCYWTFVAHVEPQYSLSRRITSKVIYLTTVIDDIYDAYGTFQELTLFTSAIRSWSGDRMSELLEYMQICYQALLDFFKEIEEDMTKQGTSYRYSYAKEVMIKQVESYYEEAKWLDKKYKPTFDEYISVASKSFGYALLLTIAFAGMSYGAAKKDDFDWLVSEPKFLKVVELICRLLDDLVSSKLEKQRGHIPTLVECYSNQYKVSEEEAIIALKKKISDSWKDLNKEIIKPTTMSRPLLILVLLLVRSVEELYKEEDAYTNNVKHLQDGIFAMFGDAFSL 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24418534 24420815 + BLOR11787 Blo03g00606 58070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00606 554 SUPERFAMILY Terpenoid synthases 227 550 IPR008949 -
Blo03g00606 554 Gene3D - 63 226 IPR036965 GO:0010333|GO:0016829
Blo03g00606 554 PANTHER TERPENE SYNTHASE 2-RELATED 12 532 - -
Blo03g00606 554 Pfam Terpene synthase, N-terminal domain 25 200 IPR001906 GO:0010333|GO:0016829
Blo03g00606 554 Pfam Terpene synthase family, metal binding domain 231 497 IPR005630 GO:0000287|GO:0010333|GO:0016829
Blo03g00606 554 CDD Terpene_cyclase_plant_C1 16 548 IPR044814 GO:0010333|GO:0016102
Blo03g00606 554 SFLD Terpene Cyclase Like 1 C Terminal Domain 227 538 IPR034741 -
Blo03g00606 554 Gene3D Farnesyl Diphosphate Synthase 24 541 IPR008949 -
Blo03g00606 554 PANTHER OS04G0344100 PROTEIN-RELATED 12 532 - -
Blo03g00606 554 Coils Coil 40 60 - -
Blo03g00606 554 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 23 222 IPR008930 -
Blo03g00606 554 SFLD Isoprenoid Synthase Type I 227 538 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00606 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K23172 zju:107430474 511.146
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00569 Blo-Chr3:22462612 Blo03g00606 Blo-Chr3:24418534 3.55E-43 dispersed
Blo03g00606 Blo-Chr3:24418534 Blo19g00082 Blo-Chr19:2017973 0 dispersed
Blo03g00605 Blo-Chr3:24251974 Blo03g00606 Blo-Chr3:24418534 0 tandem
Blo03g00606 Blo-Chr3:24418534 Blo03g00607 Blo-Chr3:24551158 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g397 Blo03g00606 . . . . . . Bma13g00965 . . . . . . . . . . . . . . . . Cla10g00588 Cam10g0575 Cec10g0606 Cco10g0582 Clacu10g0607 Cmu10g1420 Cre10g0821 . . . . . Csa03g00576 . Cme06g02687 . . . . . . . . . . . . Cma16g00825 . . Cpe14g00717 . Bhi11g00694 Tan01g1630 . . Hepe07g1116 . . . . . . . . . Lsi05g00661 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013164 2 0 21 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00606 Blo_Chr03 FPKM 27.21406 28.708342 0.067831 0.118884 0.773096 0.907681 0.484166 0.252052 0.199467 0.032051