Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00641 ATGGCTTCAAAGCTAGTACTGGTTATAGTCTTCCTCTTCGATGTCATAGCTCTCGGCTTGGCTATTGCTGCTGAACAAAGACGAAGCACTGCCACTGTTGTCCCGGATAATGAAAAAAATTACACCTATTGTGTTTATGACTCGGATATCTCAACCGGCTTTGGCGTTGGGGCATTCTTGTTTCTCATGATGAGTCAAGTCCTCATAATGGTGGCTAGTCGATGCTTTTGCTGCGGAAAGCCTTTGAGTCCGGGTGGTTCAAGGGCCTGTTCAGTTGTTCTCTTCATAATCTGCTGGGTGTGTTTCTTTATTGCCGAGTTGTGCTTATTGGCGGGTGCAGTGAGGAATGCCTACCACACCAAATACCGGGGCATATTCAATGAAGATCCCCCGTCTTGCGAAGTCGTGAGAAAGGGAGTCTTTGCAGCCGGGGCGGCTTTTGTGTTCTTCACGGCTATTGTCTCCGAGTTTTACTACGTCTGCTATTCCCGAGCCAGAGAGAGCTTTCAGCCGTACGGAGGAGAGACAGGAGTTGGCATGGGAACTTATAAA 552 48.37 MASKLVLVIVFLFDVIALGLAIAAEQRRSTATVVPDNEKNYTYCVYDSDISTGFGVGAFLFLMMSQVLIMVASRCFCCGKPLSPGGSRACSVVLFIICWVCFFIAELCLLAGAVRNAYHTKYRGIFNEDPPSCEVVRKGVFAAGAAFVFFTAIVSEFYYVCYSRARESFQPYGGETGVGMGTYK 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27392906 27394800 + BLOR11822 Blo03g00641 58105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00641 184 Pfam Protein of unknown function (DUF1218) 58 153 IPR009606 -
Blo03g00641 184 PANTHER - 1 184 - -
Blo03g00641 184 PANTHER OS07G0462200 PROTEIN-RELATED 1 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00641 - - - cit:102614086 306.219
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g00641 Blo07g00928 CCT
Blo03g00641 Blo10g00791 CCT
Blo03g00641 Blo07g00928 ECH
Blo03g01430 Blo03g00641 ECH
Blo03g00641 Blo10g00791 ECH
Blo03g00641 Blo03g01430 BCT
Blo03g00641 Blo03g01536 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00813 Blo-Chr1:12569689 Blo03g00641 Blo-Chr3:27392906 1.58E-58 wgd
Blo03g00641 Blo-Chr3:27392906 Blo03g01536 Blo-Chr3:42363385 9.13E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g262 Blo03g00641 Blo03g01536 Bda07g00285 Bda09g00492 . Bpe02g01908 . . Cmo16g00849 . . Cma09g00881 . Car09g00799 Sed01g2080 Cpe06g00705 . Bhi09g03393 Tan01g4424 Cmetu12g0009 . Hepe01g1369 Mch11g1090 . Cla11g01779 Cam11g1843 Cec11g1864 Cco11g1874 Clacu11g2005 Cmu11g1814 Cre11g2222 Cone6ag0129 Cone9ag0153 . . Lsi04g01317 Csa04g02364 Chy07g00093 . . . . . Bpe11g00492 . Bma07g01190 . . . Cmo09g00871 Cma04g00909 Cma16g00787 Car04g00854 . Cpe14g00685 . . . . . . . . . . . . . . . Lsi05g00709 . Chy06g01707 .
Vvi19g386 Blo03g00641 Blo03g01430 . Bda09g00369 Bpe09g00205 Bpe08g01147 Bma10g00526 Bma13g01007 Cmo16g00925 . . Cma09g00908 . Car09g00826 Sed07g2637 Cpe06g00731 . Bhi09g01971 Tan01g4477 Cmetu04g2100 . Hepe01g1332 Mch11g1129 . . . . . . . . Cone3ag1370 Cone10ag1303 . . Lsi04g01263 . . . Blo07g00928 Blo10g00791 Bda05g00746 Bda12g00877 . Bpe03g00811 . . . . Cmo09g00903 . . Car04g00869 . . Cpe01g00842 . . . . . . . Cla05g01563 Cam05g1673 Cec05g1677 Cco05g1717 Clacu05g1665 Cmu05g1557 Cre05g1671 . . Chy06g01773 Cme04g00757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000667 4 4 5 4 2 2 4 3 2 3 3 3 4 3 2 4 2 3 4 3 3 3 3 3 3 3 3 5 4 1 95
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00641 Blo_Chr03 FPKM 20.115664 17.403927 66.306763 64.895264 16.261366 15.73971 15.974854 19.835173 19.588301 17.569889