Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00643 ATGAGCAAGACCGGAGACGAAGACGAAGACGACGAGTGCTTCTACGAGTCTCTTGATCGCTTAGTCTCCTCATCTTGTTCTTGCTCCACTTCTAATTCGGACTCCGACAACGATTCCAATTCTTGTTCGCCGAATTATGGGTCGGAGCACATTTTTTCAGTCCCCAAGTTCCCGGCGGGTGTGTCTAACTACGATCTTTGGGTTGCTGAGCCTTCTTCCGTTTCAGAGCGGCGTAATCGCCTTCTCCAGGAAATGGGTCTTAGCAAGGATCCCTCTTTGTCGCGGGTCAAATTTGTGTCTGAAGATAAAGAAAGCGATTCGACGGAGTTCGGTCGTTTGGTATTATCAGATCACTTAAGCCGTCAAGCACAACGTAACGCTATCATCTTGTCAAAGTCGAATGCTGCGTCAAACCGAATCGTAAGCCAACACAATCGCCCTTATCATGATGACAATAATAAGTTCAATTCTTCTTCTTCATCTTCTTCTTCTTCGTTTTATTCCCCTTCAATTCGTTCATCTTATCTAGTTGATGGGACTAGTTCGTTTGTAAATAATCAGGATTTGGATTGTAATGGCATTGGTCAGGTTGATGACCAAGTCTGTACCATTAAGGATCTCGATAATGGAAAAGAGTTTATTGTGAACGAGATTAGGGAAGATGGAATGTGGAATAAGCTTAAGGAAAATGTGGAGGATGGCAATAAAGATCATGTCCACTCCTGTGTGAATGGCAGCAGTGGAGACAGTTCGAAATCGAAGAAGAAAGGAGGCTGGTTAAAAGGTATAAAGAACGTGGCTAACACCATGACAGGACAAAAAGAGAGGAGCAGTGATGAGAGGGATACTTCATCTGAAAAGGGTGGGCGCAGATCAAGTTCTGCTACAGATGACAGCCAAGACATTTCATTTCATGGGCCAGAGAGAGTAAAAGTGCGGCAATACGGGAAGTCTAATAAAGAGATCACGGCACTTTATAAGAGCCAGGAGATTCAGGCTCATAGTGGCTCTATATGGACCATTAAGTTCAGTTTGGACGGTAAATACCTTGCCAGTGCAGGTGAGGATCGGGTCATTCATGTTTGGCAAGTTTTGGAATCGGAGAGAAAGGGGGAACTATTGGGAGACAAATCAGAAGATGGGAATTTGAATTTTTTGTTCTTGGGCAATGGTTCGCCTGAACCAACTTCATTGCTGCTGAATATAGACAATCATCCAGAGAAGAAGAGAAAGGGGAGGTCTTCTTTAAGCCGAAAATCAATGAGCTTTGAACATGCTGTACTGCCGGAGACTATATTTGCTATTTCAGAGAAACCTGTGTGCTCATTCCAAGGACATCTTGATGTGGTTCTTGACCTTTCCTGGTCCAAATCTCAGCAATTGCTGTCATCTTCTATGGACAAAACAGTGCGGCTATGGAACTTGTCTAGCAAATCATGTTTGAAAATATTTTCACACAGTGACTACGTAACATGCATCCAGTTCAATCCTGTTGACGACAGATACTTCATCAGTGGATCTATAGATGCCAAGGTTCGAATATGGAGTGTCCCAGATCGTCAAGTTGTTGATTGGAGTGATCTGCATGAGATGGTGACTGCTGCTTGCTATACTCCAGATGGGCAGGGTGCATTGGTTGGTTCTTACAAAGGGAGTTGTCGTTTATACAATACATTGGATAACAAATTGCAGCCGAAATCTCACATCAATCTGCAGAACAAGAAGAAAAAATCTAATCAGAAAAAGATCACTGGTTTTCAGTTTGCCCCAGGGAGCTCATCAGAAGTTCTCATAACATCTGCAGATTCACGAATCCGGGTTGTTGATGGTGTTGAGCTGGTGCACAAGTTCAAAGGATTTCGCAACACAAACCGCCAAATTTCAGCCTACCTTACCGCAAATGGTAAATATGTGGTTTCTGCTAGTGAGGATTCTCATGTCTATATATGGAAACACGAGGCCGAATCTCGACCAATCAGAAGCAAAAGCGTCACGGATACATACTCTTATGAATACTTTCACTGCCAAGATGTGACGGTTGCAGTGCCATGGCCTGGCATCACCGACACCGACACAGACACATGGGAACTTCATAACCCTTTAACTGGAGAGCAAAACGAATTCGATAACAATCAAGAAGATGTCTCCACGGCCAATCATCCTCCGACACCTGTTGAGGACGTAAATGACCAAGACGGCTCACTTCCTGCCTCTGGCTTCACCAACAGTCCGCTTCACAGTACTATTTCAAGTGTCACCAACAGTTTCTTCTTTGATCGAATCTCTGCCACTTGGCCGGAGGAGAAACTCCAAAGCGCTCGAAACCGGAGTAGTCCTCGAATTAGCAGTGACATCTCGAATGGGACAAATCAGAGCTCTTCGGCTTGGGTCGGGAGTTTAGTTGGGTCAATGGCTCTCCAGGCTGCTTCTTTGGTTTCCTCTGGTTTCTCAATTCCTAAAGAGGGAAAGGCAATTGTTTCTTACAAAGATTCAAGTTTGTTTGGAGTTTCTTTGTCAGATCATCTCAAAGTTGAGTCCTGCTCCTCTGCTCTGAGGTGCAAGAAGTTTGGGGCAGTTCGGGCCCAAACGACGACCACAACAACTCCGGCAGTGAACAAATCTGCACCAGAGGGAAAGAAGACGCTAAGAAAAGGCAGTGTTATTATCACTGGAGCTTCCTCTGGATTGGGTTTAGCCACAGCCAAGGCACTGGCTGAAACCGGAAAATGGGATGTAATTATGGCCTGCAGAGATTTTCTCAAAGCTGAAAGGGCAGCAAAAGCCGCTGGCATGTCCAAAGAAAACTACAGCATTATGCACTTAGACCTTGCTTCCCTTGACAGTGTTCGTCAATTTGTTGACAACTTTAGGCGATCTGGCAGGCCTCTTGACGTGCTTGTGTGCAATGCCGCTGTCTACTTACCGACTGCTAAGGAGCCTACCTTCACTGCCGATGGATTTGAACTTAGTGTTGGGACTAATCATCTTGGCCACTTTCTTCTATCAAGATCTTTGCTTGAGGACTTGAATAAATCCGATTACCCATCAAGACGGCTCATTATCGTCGGTTCAATCACGGGTAATGATAACACCTTGGCTGGAAATGTGCCTCCTAAGGCCAACTTGGGTGACCTGAGGGGACTTGCTGGAGGGCTTAACGGGCTGAACAGCTCGACCATGATCGACGGTGGAGCGTTTGACGGTGCTAAGGCTTATAAGGACAGCAAAGTTTGCAATATGTTGACAATGCAAGAGTTTCACAGGCGGTACCATGAAGAAACTGGCATAACCTTTGCATCTCTCTACCCGGGATGCATTGCCACAACGGGCTTGTTTAGGGAGCACATTCCCTTGTTCAGGCTTCTGTTTCCTCCTTTCCAAAAGTACATCACGAAAGGCTTTGTCTCCGAGGATGAATCTGGCAAAAGGCTGGCCCAGGTTGTCAGCGATCCAAGCTTGACAAAATCGGGTGTGTATTGGAGTTGGAACAAGGATTCGGCTTCATTTGAGAATCAATTGTCAAAAGAAGCAAGCAATGTCGATAAGGCTAGAAAGGTGTGGGAACTTAGTGAATCTATCGTCGGTTTGGCCTAA 3594 45.33 MSKTGDEDEDDECFYESLDRLVSSSCSCSTSNSDSDNDSNSCSPNYGSEHIFSVPKFPAGVSNYDLWVAEPSSVSERRNRLLQEMGLSKDPSLSRVKFVSEDKESDSTEFGRLVLSDHLSRQAQRNAIILSKSNAASNRIVSQHNRPYHDDNNKFNSSSSSSSSSFYSPSIRSSYLVDGTSSFVNNQDLDCNGIGQVDDQVCTIKDLDNGKEFIVNEIREDGMWNKLKENVEDGNKDHVHSCVNGSSGDSSKSKKKGGWLKGIKNVANTMTGQKERSSDERDTSSEKGGRRSSSATDDSQDISFHGPERVKVRQYGKSNKEITALYKSQEIQAHSGSIWTIKFSLDGKYLASAGEDRVIHVWQVLESERKGELLGDKSEDGNLNFLFLGNGSPEPTSLLLNIDNHPEKKRKGRSSLSRKSMSFEHAVLPETIFAISEKPVCSFQGHLDVVLDLSWSKSQQLLSSSMDKTVRLWNLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSIDAKVRIWSVPDRQVVDWSDLHEMVTAACYTPDGQGALVGSYKGSCRLYNTLDNKLQPKSHINLQNKKKKSNQKKITGFQFAPGSSSEVLITSADSRIRVVDGVELVHKFKGFRNTNRQISAYLTANGKYVVSASEDSHVYIWKHEAESRPIRSKSVTDTYSYEYFHCQDVTVAVPWPGITDTDTDTWELHNPLTGEQNEFDNNQEDVSTANHPPTPVEDVNDQDGSLPASGFTNSPLHSTISSVTNSFFFDRISATWPEEKLQSARNRSSPRISSDISNGTNQSSSAWVGSLVGSMALQAASLVSSGFSIPKEGKAIVSYKDSSLFGVSLSDHLKVESCSSALRCKKFGAVRAQTTTTTTPAVNKSAPEGKKTLRKGSVIITGASSGLGLATAKALAETGKWDVIMACRDFLKAERAAKAAGMSKENYSIMHLDLASLDSVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRSLLEDLNKSDYPSRRLIIVGSITGNDNTLAGNVPPKANLGDLRGLAGGLNGLNSSTMIDGGAFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFVSEDESGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSKEASNVDKARKVWELSESIVGLA 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27416956 27425218 + BLOR11824 Blo03g00643 58107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00643 1197 ProSiteProfiles Trp-Asp (WD) repeats profile. 483 517 IPR001680 GO:0005515
Blo03g00643 1197 MobiDBLite consensus disorder prediction 700 724 - -
Blo03g00643 1197 PRINTS Glucose/ribitol dehydrogenase family signature 1094 1111 IPR002347 -
Blo03g00643 1197 PRINTS Glucose/ribitol dehydrogenase family signature 886 903 IPR002347 -
Blo03g00643 1197 PRINTS Glucose/ribitol dehydrogenase family signature 961 972 IPR002347 -
Blo03g00643 1197 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 483 517 - -
Blo03g00643 1197 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 185 229 - -
Blo03g00643 1197 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 229 801 - -
Blo03g00643 1197 Pfam WD domain, G-beta repeat 479 516 IPR001680 GO:0005515
Blo03g00643 1197 Pfam WD domain, G-beta repeat 438 474 IPR001680 GO:0005515
Blo03g00643 1197 Pfam WD domain, G-beta repeat 330 362 IPR001680 GO:0005515
Blo03g00643 1197 ProSitePatterns Trp-Asp (WD) repeats signature. 461 475 IPR019775 -
Blo03g00643 1197 PRINTS G protein beta WD-40 repeat signature 503 517 IPR020472 -
Blo03g00643 1197 PRINTS G protein beta WD-40 repeat signature 350 364 IPR020472 -
Blo03g00643 1197 PRINTS G protein beta WD-40 repeat signature 461 475 IPR020472 -
Blo03g00643 1197 MobiDBLite consensus disorder prediction 274 294 - -
Blo03g00643 1197 Pfam short chain dehydrogenase 887 1030 IPR002347 -
Blo03g00643 1197 ProSiteProfiles Trp-Asp (WD) repeats profile. 331 372 IPR001680 GO:0005515
Blo03g00643 1197 PANTHER WD REPEAT DOMAIN 44 5 183 IPR040324 -
Blo03g00643 1197 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 331 364 - -
Blo03g00643 1197 TIGRFAM LPOR: light-dependent protochlorophyllide reductase 883 1197 IPR005979 GO:0016630
Blo03g00643 1197 MobiDBLite consensus disorder prediction 144 167 - -
Blo03g00643 1197 MobiDBLite consensus disorder prediction 700 741 - -
Blo03g00643 1197 Gene3D - 415 682 IPR015943 GO:0005515
Blo03g00643 1197 CDD LPOR_like_SDR_c_like 884 1196 - -
Blo03g00643 1197 Gene3D - 874 1196 - -
Blo03g00643 1197 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 886 1162 IPR036291 -
Blo03g00643 1197 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 443 477 - -
Blo03g00643 1197 Gene3D - 194 395 IPR015943 GO:0005515
Blo03g00643 1197 MobiDBLite consensus disorder prediction 235 313 - -
Blo03g00643 1197 ProSiteProfiles Trp-Asp (WD) repeats profile. 443 483 IPR001680 GO:0005515
Blo03g00643 1197 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 5 183 - -
Blo03g00643 1197 MobiDBLite consensus disorder prediction 768 790 - -
Blo03g00643 1197 PANTHER WD REPEAT DOMAIN 44 185 229 IPR040324 -
Blo03g00643 1197 PANTHER WD REPEAT DOMAIN 44 229 801 IPR040324 -
Blo03g00643 1197 MobiDBLite consensus disorder prediction 152 167 - -
Blo03g00643 1197 SUPERFAMILY WD40 repeat-like 326 654 IPR036322 GO:0005515
Blo03g00643 1197 SMART WD40_4 519 557 IPR001680 GO:0005515
Blo03g00643 1197 SMART WD40_4 436 474 IPR001680 GO:0005515
Blo03g00643 1197 SMART WD40_4 324 363 IPR001680 GO:0005515
Blo03g00643 1197 SMART WD40_4 610 651 IPR001680 GO:0005515
Blo03g00643 1197 SMART WD40_4 477 516 IPR001680 GO:0005515
Blo03g00643 1197 SMART WD40_4 564 609 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00643 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - zju:107432447 984.556
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g01537 Blo03g00643 ECH
Blo03g00643 Blo03g01537 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01116 Blo-Chr1:40080987 Blo03g00643 Blo-Chr3:27416956 3.11E-149 dispersed
Blo03g00643 Blo-Chr3:27416956 Blo09g00017 Blo-Chr9:174584 3.19E-108 dispersed
Blo03g00643 Blo-Chr3:27416956 Blo03g01537 Blo-Chr3:42530405 5.03E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g260 Blo03g00643 Blo03g01537 Bda07g00287 . . Bpe08g01033 . . . . Cma01g01197 . Car01g01022 Car09g00792 Sed05g2572 Cpe06g00703 Cpe02g00712 Bhi09g03395 Tan01g4418 Cmetu07g1898 . Hepe01g1371 Mch11g1088 . . . . . . . . Cone6ag0131 Cone9ag0156 Cone14ag1074 Cone15ag1067 Lsi04g01319 Csa04g02361 Chy07g00090 . . . . . Bpe11g00490 . Bma07g01189 . . Cmo01g01251 Cmo09g00869 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003266 1 2 1 1 2 1 3 1 1 2 1 0 2 2 1 3 0 4 3 1 1 2 2 2 2 1 2 2 2 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00643 Blo_Chr03 FPKM 6.563015 7.925547 16.059448 15.562823 19.441814 21.279264 19.568293 16.685781 17.020931 18.536327